Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MF628_RS15925 Genome accession   NZ_CP097767
Coordinates   3430890..3432263 (+) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus polymyxa strain R 5.31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3425890..3437263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS15905 (MF628_003170) - 3426009..3426473 (+) 465 WP_013312188.1 CtsR family transcriptional regulator -
  MF628_RS15910 (MF628_003171) - 3426543..3427067 (+) 525 WP_250269996.1 UvrB/UvrC motif-containing protein -
  MF628_RS15915 (MF628_003172) - 3427096..3428160 (+) 1065 WP_250269997.1 protein arginine kinase -
  MF628_RS15920 (MF628_003173) clpC 3428205..3430649 (+) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  MF628_RS15925 (MF628_003174) radA 3430890..3432263 (+) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  MF628_RS15930 (MF628_003175) disA 3432276..3433352 (+) 1077 WP_013373290.1 DNA integrity scanning diadenylate cyclase DisA -
  MF628_RS15935 (MF628_003176) pssA 3433407..3434153 (+) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MF628_RS15940 (MF628_003177) - 3434340..3435425 (+) 1086 WP_013312181.1 PIN/TRAM domain-containing protein -
  MF628_RS15945 (MF628_003178) ispD 3435496..3436194 (+) 699 WP_053326187.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MF628_RS15950 (MF628_003179) ispF 3436191..3436667 (+) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=692108 MF628_RS15925 WP_013312184.1 3430890..3432263(+) (radA) [Paenibacillus polymyxa strain R 5.31]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=692108 MF628_RS15925 WP_013312184.1 3430890..3432263(+) (radA) [Paenibacillus polymyxa strain R 5.31]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACAGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGTGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAGCTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGACTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACCGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAAGTGCGGGAGTGTACTTCGCGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTGGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCACGTTTGTTGGAACATATGGTCGATTGTGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTTGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTCTCGAATCCTTCTGAACTATTCCTGTCTGAGCGACCACTGGGGGTGGCGG
GTTCTACTGTTGTAGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACGCATTTT
CCATCTCCGCGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTACGTGCGGTATCCCGAGCAGAACAGCGAGTACGGGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58