Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MF620_RS22135 Genome accession   NZ_CP097766
Coordinates   5038132..5039505 (-) Length   457 a.a.
NCBI ID   WP_013373291.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 6.14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5033132..5044505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF620_RS22110 (MF620_004406) ispF 5033724..5034200 (-) 477 WP_016818638.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MF620_RS22115 (MF620_004407) ispD 5034197..5034895 (-) 699 WP_107735230.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MF620_RS22120 (MF620_004408) - 5034966..5036051 (-) 1086 WP_107735231.1 PIN/TRAM domain-containing protein -
  MF620_RS22125 (MF620_004409) pssA 5036242..5036988 (-) 747 WP_016818635.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MF620_RS22130 (MF620_004410) disA 5037043..5038119 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  MF620_RS22135 (MF620_004411) radA 5038132..5039505 (-) 1374 WP_013373291.1 DNA repair protein RadA Machinery gene
  MF620_RS22140 (MF620_004412) clpC 5039748..5042192 (-) 2445 WP_016818634.1 ATP-dependent protease ATP-binding subunit ClpC -
  MF620_RS22145 (MF620_004413) - 5042237..5043301 (-) 1065 WP_090738074.1 protein arginine kinase -
  MF620_RS22150 (MF620_004414) - 5043331..5043855 (-) 525 WP_016818632.1 UvrB/UvrC motif-containing protein -
  MF620_RS22155 (MF620_004415) - 5043940..5044404 (-) 465 WP_126666918.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49242.94 Da        Isoelectric Point: 6.7620

>NTDB_id=692082 MF620_RS22135 WP_013373291.1 5038132..5039505(-) (radA) [Paenibacillus polymyxa strain R 6.14]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=692082 MF620_RS22135 WP_013373291.1 5038132..5039505(-) (radA) [Paenibacillus polymyxa strain R 6.14]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACAGAATGTGGCTATGAATCGCCTAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGATCTTCCCTTCTTACTCATA
GCACAAAAGACAAACCGCTTCCTATTATTGAAGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGTGAATTA
AATCGTGTACTCGGTGGAGGTGTGGTGCCAGGTTCACTTGTTCTGGTGGGTGGAGACCCGGGGATCGGTAAGTCTACGCT
TATGCTGCAAACCTCTAATGAGCTGGCTTTAACTGGTTTAAAGGTACTCTACGTGTCTGGTGAGGAATCCGTCCGCCAAA
CGAAGCTACGTGCAGATCGCCTCGGTGCTTTGTCTCCCAGTCTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACAAGTGC
GCCTGGTAGTGTAGCTCAGGTGCGCGAGTGTACTTCACGATTTATGCGGATTGCCAAGGGATTAGGTATTGCTACAGTAC
TGGTAGGGCATGTGACCAAAGAAGGCGCTATTGCAGGTCCGCGTTTGTTGGAGCATATGGTCGATTGTGTACTTTATTTT
GAAGGAGAGCGCCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGTTTCGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCCGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAGCTCTTCCTGTCCGAACGGCCACTGGGGGTGGCTG
GTTCCACAGTCGTTGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAACTGCAAGCACTCATTGCGGCTACGCATTTT
CCATCTCCACGCCGAATGGGTACGGGGATTGACCATCATCGGATGGGATTAATCATTGCCGTACTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAATGTTGCTGGAGGCGTAAAGCTGGATGAACCAGCGGTGGATTTAGCCA
TAGCGGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGTGAAGTAGGACTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAACAGCGAGTGCGAGAAGCAGAGAAATTAGGTTTCAAACGGGTGATCATGCC
CGAGAAAAGCTTGAAGGGCTGGACACATCCAAAAGGGATACAAATTATCGGAGTTGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.674
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58