Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MF620_RS21145 Genome accession   NZ_CP097766
Coordinates   4815703..4816656 (-) Length   317 a.a.
NCBI ID   WP_040102839.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 6.14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4810703..4821656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF620_RS21120 (MF620_004209) - 4811172..4812083 (-) 912 WP_250251308.1 aldo/keto reductase -
  MF620_RS21125 (MF620_004210) - 4812242..4812985 (-) 744 WP_126666658.1 alpha/beta hydrolase -
  MF620_RS21130 (MF620_004211) - 4813018..4813998 (-) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  MF620_RS21135 (MF620_004212) - 4814011..4814769 (-) 759 WP_045245008.1 ABC transporter ATP-binding protein -
  MF620_RS21140 (MF620_004213) - 4814763..4815713 (-) 951 WP_044786281.1 iron chelate uptake ABC transporter family permease subunit -
  MF620_RS21145 (MF620_004214) ceuB 4815703..4816656 (-) 954 WP_040102839.1 ABC transporter permease Machinery gene
  MF620_RS21150 (MF620_004215) - 4816980..4817657 (+) 678 WP_013373136.1 response regulator transcription factor -
  MF620_RS21155 (MF620_004216) - 4817659..4818576 (+) 918 WP_040102838.1 sensor histidine kinase -
  MF620_RS21160 (MF620_004217) - 4818685..4819362 (+) 678 WP_013373138.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34760.78 Da        Isoelectric Point: 9.9012

>NTDB_id=692081 MF620_RS21145 WP_040102839.1 4815703..4816656(-) (ceuB) [Paenibacillus polymyxa strain R 6.14]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLISMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=692081 MF620_RS21145 WP_040102839.1 4815703..4816656(-) (ceuB) [Paenibacillus polymyxa strain R 6.14]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATTATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGATCAGTATGTACATGGGGGATAATCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505