Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OZ175_RS20850 Genome accession   NZ_CP113974
Coordinates   4449378..4449974 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain M6A146     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4444378..4454974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ175_RS20830 (OZ175_20830) aroK 4445509..4446027 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OZ175_RS20835 (OZ175_20835) pilQ 4446039..4448183 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  OZ175_RS20840 (OZ175_20840) pilP 4448279..4448761 (-) 483 WP_268858299.1 type 4a pilus biogenesis lipoprotein PilP -
  OZ175_RS20845 (OZ175_20845) pilO 4448758..4449381 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OZ175_RS20850 (OZ175_20850) pilN 4449378..4449974 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OZ175_RS20855 (OZ175_20855) pilM 4449974..4451038 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OZ175_RS20860 (OZ175_20860) - 4451223..4453694 (+) 2472 WP_268858300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=692003 OZ175_RS20850 WP_003095839.1 4449378..4449974(-) (pilN) [Pseudomonas aeruginosa strain M6A146]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=692003 OZ175_RS20850 WP_003095839.1 4449378..4449974(-) (pilN) [Pseudomonas aeruginosa strain M6A146]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369