Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M9O79_RS14000 Genome accession   NZ_CP097721
Coordinates   2865040..2865669 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS1665     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2860040..2870669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O79_RS13985 (M9O79_13990) helD 2860282..2862336 (-) 2055 WP_001297106.1 DNA helicase IV -
  M9O79_RS13990 (M9O79_13995) yccF 2862459..2862905 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M9O79_RS13995 (M9O79_14000) yccS 2862915..2865077 (+) 2163 WP_000875015.1 YccS family putative transporter -
  M9O79_RS14000 (M9O79_14005) sxy/tfoX 2865040..2865669 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M9O79_RS14005 (M9O79_14010) sulA 2865888..2866397 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M9O79_RS14010 (M9O79_14015) ompA 2866754..2867806 (+) 1053 WP_000750419.1 porin OmpA -
  M9O79_RS14015 (M9O79_14020) matP 2867882..2868334 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M9O79_RS14020 (M9O79_14025) ycbZ 2868520..2870280 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=691899 M9O79_RS14000 WP_000839153.1 2865040..2865669(-) (sxy/tfoX) [Escherichia coli strain MS1665]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=691899 M9O79_RS14000 WP_000839153.1 2865040..2865669(-) (sxy/tfoX) [Escherichia coli strain MS1665]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1