Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   EP178_RS01635 Genome accession   NZ_AP018377
Coordinates   264182..265222 (-) Length   346 a.a.
NCBI ID   WP_003687618.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC428     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 259182..270222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP178_RS01615 (NgFC428_00255) - 260678..261304 (-) 627 WP_003687611.1 phosphoribosylanthranilate isomerase -
  EP178_RS01620 (NgFC428_00256) greB 261363..261854 (-) 492 WP_003687613.1 transcription elongation factor GreB -
  EP178_RS01625 (NgFC428_00257) purF 261954..263498 (-) 1545 WP_003694871.1 amidophosphoribosyltransferase -
  EP178_RS01630 (NgFC428_00258) - 263692..264189 (-) 498 WP_003687616.1 CvpA family protein -
  EP178_RS01635 (NgFC428_00259) tpc 264182..265222 (-) 1041 WP_003687618.1 cell division protein FtsN Machinery gene
  EP178_RS01640 (NgFC428_00260) folC 265236..266510 (-) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  EP178_RS01645 (NgFC428_00261) - 266541..266981 (-) 441 WP_003687622.1 protein YgfX -
  EP178_RS01650 (NgFC428_00262) - 266986..267345 (-) 360 WP_003687624.1 hypothetical protein -
  EP178_RS01655 (NgFC428_00263) - 267418..268146 (-) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  EP178_RS01660 (NgFC428_00264) - 268188..268643 (-) 456 WP_003690747.1 hypothetical protein -
  EP178_RS01665 (NgFC428_00265) - 268755..269324 (-) 570 WP_003687630.1 GTP pyrophosphokinase -
  EP178_RS01670 (NgFC428_00266) rsmA 269339..270118 (-) 780 WP_010359834.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 36992.15 Da        Isoelectric Point: 9.8118

>NTDB_id=69161 EP178_RS01635 WP_003687618.1 264182..265222(-) (tpc) [Neisseria gonorrhoeae strain FC428]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRSAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=69161 EP178_RS01635 WP_003687618.1 264182..265222(-) (tpc) [Neisseria gonorrhoeae strain FC428]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCTCTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains


Predicted by InterproScan.

(272-344)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

100

100

1


Multiple sequence alignment