Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M8232_RS15945 Genome accession   NZ_CP097646
Coordinates   3266530..3267126 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain NE1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3261530..3272126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8232_RS15930 (M8232_15930) helD 3261741..3263795 (-) 2055 WP_004201438.1 DNA helicase IV -
  M8232_RS15935 (M8232_15935) - 3263920..3264366 (+) 447 WP_004201437.1 YccF domain-containing protein -
  M8232_RS15940 (M8232_15940) yccS 3264384..3266519 (+) 2136 WP_004201435.1 YccS family putative transporter -
  M8232_RS15945 (M8232_15945) sxy/tfoX 3266530..3267126 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  M8232_RS15950 (M8232_15950) sulA 3267475..3267984 (+) 510 WP_109938801.1 SOS-induced cell division inhibitor SulA -
  M8232_RS15955 (M8232_15955) ompA 3268337..3269407 (+) 1071 WP_002898408.1 porin OmpA -
  M8232_RS15960 (M8232_15960) matP 3269596..3270048 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  M8232_RS15965 (M8232_15965) - 3270234..3271991 (+) 1758 WP_156234674.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=691440 M8232_RS15945 WP_004201433.1 3266530..3267126(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NE1]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=691440 M8232_RS15945 WP_004201433.1 3266530..3267126(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain NE1]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5