Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MW290_RS14820 Genome accession   NZ_CP097636
Coordinates   117574..118941 (-) Length   455 a.a.
NCBI ID   WP_250200008.1    Uniprot ID   -
Organism   Aquincola tertiaricarbonis strain RN12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112574..123941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW290_RS14790 (MW290_14790) - 113000..113218 (-) 219 WP_250198488.1 zinc-finger domain-containing protein -
  MW290_RS14795 (MW290_14795) - 113246..114172 (-) 927 WP_250198489.1 branched-chain amino acid transaminase -
  MW290_RS14800 (MW290_14800) - 114382..115341 (+) 960 WP_250198490.1 triacylglycerol lipase -
  MW290_RS14805 (MW290_14805) - 115344..116297 (+) 954 WP_250200007.1 lipase secretion chaperone -
  MW290_RS14810 (MW290_14810) - 116319..116732 (-) 414 WP_250198491.1 hypothetical protein -
  MW290_RS14815 (MW290_14815) - 116754..117557 (-) 804 WP_250198492.1 metallophosphoesterase -
  MW290_RS14820 (MW290_14820) radA 117574..118941 (-) 1368 WP_250200008.1 DNA repair protein RadA Machinery gene
  MW290_RS14825 (MW290_14825) - 119007..119633 (+) 627 WP_250198493.1 LysE family transporter -
  MW290_RS14830 (MW290_14830) arfB 119630..120034 (-) 405 WP_250198494.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  MW290_RS14835 (MW290_14835) - 120031..120552 (-) 522 WP_250198495.1 acyl-CoA thioesterase -
  MW290_RS14840 (MW290_14840) - 120571..120816 (-) 246 WP_250198496.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MW290_RS14845 (MW290_14845) alr 120904..122001 (-) 1098 WP_250198497.1 alanine racemase -
  MW290_RS14850 (MW290_14850) lplT 122115..123389 (+) 1275 WP_250198498.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47781.02 Da        Isoelectric Point: 7.3483

>NTDB_id=691365 MW290_RS14820 WP_250200008.1 117574..118941(-) (radA) [Aquincola tertiaricarbonis strain RN12]
MAKDKSIFTCRECGGTSAKWLGKCPHCGAWNTLEETAAEPAAGSGKNRFQSLARSQPVATLADIDAADVARTPTGQEELD
RVLGGGIVAGGVVLIGGDPGIGKSTLLLQAVDALSTQMKVLYVTGEESGAQIALRARRLGLEGRQVRVAAEIQLERILAT
IEAEQPAFCVIDSIQTLYSEQLSSAPGSVAQVRECAAQLTRTAKTGGCTIVLVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSTHGDPVPGACVLVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVLLAIQSSLRGRPLPRGFIAFGEVGLAGEV
RPAPRGQERLKEAAKLGFSIAVVPKANAPKKPIEGLTVHAVERIEEAIDVVRGLT

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=691365 MW290_RS14820 WP_250200008.1 117574..118941(-) (radA) [Aquincola tertiaricarbonis strain RN12]
ATGGCCAAGGACAAGTCGATATTCACCTGCCGCGAATGCGGCGGCACCAGCGCCAAGTGGCTGGGCAAATGCCCGCACTG
CGGCGCCTGGAACACGCTGGAGGAAACCGCCGCCGAGCCGGCTGCCGGCAGCGGCAAGAATCGCTTCCAGTCGCTGGCAC
GCAGCCAGCCGGTGGCCACGCTGGCCGACATCGACGCCGCCGACGTGGCGCGCACGCCCACCGGCCAGGAAGAGCTGGAC
CGGGTGCTGGGCGGTGGCATCGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGAGCACGCTGCT
GCTGCAGGCCGTGGACGCGCTGTCCACGCAGATGAAGGTGCTGTACGTCACCGGTGAAGAAAGCGGCGCGCAGATCGCGC
TGCGCGCCCGCCGGCTGGGCCTGGAAGGCCGGCAGGTGCGGGTGGCGGCCGAGATCCAGCTCGAACGCATCCTGGCCACC
ATCGAAGCAGAGCAGCCGGCCTTCTGCGTGATCGACTCGATCCAGACCCTCTACTCGGAGCAGCTCAGCTCCGCGCCCGG
CTCGGTGGCCCAGGTGCGCGAGTGCGCCGCCCAGCTCACCCGCACCGCCAAGACCGGCGGCTGCACCATCGTGCTGGTGG
GCCACGTCACCAAGGAAGGGGCGTTGGCCGGCCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTCGAGGGC
GACACCCACAGCAGCTTCCGGCTGGTGCGGGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTCTTTGCCAT
GACCGAGCGCGGCCTGAAAGGCGTGACCAACCCCAGCGCCATCTTCCTGTCCACCCACGGCGACCCGGTGCCCGGCGCCT
GCGTGCTGGTGACGCTGGAAGGCACGCGGCCGATGCTGGTGGAGATCCAGGCACTGGTGGACAGCGGCGGACCGAGCCCG
CGCCGCCTGAGCGTGGGCCTGGACCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGCCGGCGTGGCCTG
CGCCGACCAGGACGTGTTCGTGAACGCGGTGGGCGGCGTGCGGATCAGCGAGCCGGCGGCCGACCTGGCGGTGCTGCTGG
CCATCCAGAGCAGCCTGCGCGGCAGGCCGCTGCCGCGCGGCTTCATCGCCTTTGGCGAAGTGGGCCTGGCCGGCGAGGTG
CGGCCGGCACCACGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTTTCCATCGCGGTGGTGCCCAAGGCCAA
TGCGCCCAAGAAGCCGATCGAGGGCCTGACCGTGCATGCGGTCGAGCGCATCGAAGAGGCCATCGACGTGGTGCGCGGGC
TCACCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

99.56

0.488
  radA Streptococcus mitis NCTC 12261

47.672

99.121

0.473
  radA Streptococcus pneumoniae D39

49.533

94.066

0.466
  radA Streptococcus pneumoniae TIGR4

49.533

94.066

0.466
  radA Streptococcus mitis SK321

49.533

94.066

0.466
  radA Streptococcus pneumoniae R6

49.533

94.066

0.466
  radA Streptococcus pneumoniae Rx1

49.533

94.066

0.466