Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   M8855_RS04330 Genome accession   NZ_CP097620
Coordinates   947312..949705 (-) Length   797 a.a.
NCBI ID   WP_249984292.1    Uniprot ID   -
Organism   Pasteurella multocida strain P2192     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942312..954705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8855_RS04310 (M8855_04310) kdsB 943530..944306 (-) 777 WP_005754311.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M8855_RS04315 (M8855_04315) - 944308..944490 (-) 183 WP_005716837.1 Trm112 family protein -
  M8855_RS04320 (M8855_04320) lpxK 944502..945479 (-) 978 WP_005722669.1 tetraacyldisaccharide 4'-kinase -
  M8855_RS04325 (M8855_04325) msbA 945511..947259 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M8855_RS04330 (M8855_04330) rec2 947312..949705 (-) 2394 WP_249984292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M8855_RS04335 (M8855_04335) dksA 950002..950439 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  M8855_RS04340 (M8855_04340) pcnB 950527..952032 (+) 1506 WP_005754319.1 polynucleotide adenylyltransferase PcnB -
  M8855_RS04345 (M8855_04345) folK 952044..952541 (+) 498 WP_005716864.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  M8855_RS04350 (M8855_04350) - 952528..953610 (-) 1083 WP_005716866.1 homoserine O-acetyltransferase -
  M8855_RS04355 (M8855_04355) - 953773..954483 (+) 711 WP_249984293.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91154.59 Da        Isoelectric Point: 9.7827

>NTDB_id=691297 M8855_RS04330 WP_249984292.1 947312..949705(-) (rec2) [Pasteurella multocida strain P2192]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWLFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSFWSIANTIAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDFKKESLKCYAKVPRFFHLNQMRQLNPSLKWKTYLLAVVISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQLLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=691297 M8855_RS04330 WP_249984292.1 947312..949705(-) (rec2) [Pasteurella multocida strain P2192]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCTGCACAATTGTCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCGCTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGCTCTTTAGTCTTCTTCATTTGCAACTTGGTTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATCTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTTTTGGTCTATTGCAAATACTATTGCGAAATATGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTTAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGTCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGCTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTCGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACTCTTAACATTCAAGGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Competence protein (Competence)

(213-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.688

96.612

0.499