Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   D8S83_RS08430 Genome accession   NZ_AP018349
Coordinates   1695803..1696873 (-) Length   356 a.a.
NCBI ID   WP_000776407.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690803..1701873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS08390 gcvPA 1690980..1692326 (-) 1347 WP_020977293.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  D8S83_RS08395 gcvT 1692346..1693437 (-) 1092 WP_020977294.1 glycine cleavage system aminomethyltransferase GcvT -
  D8S83_RS08400 - 1693596..1694120 (-) 525 WP_020977295.1 shikimate kinase -
  D8S83_RS08405 - 1694110..1694256 (-) 147 WP_001789879.1 hypothetical protein -
  D8S83_RS08410 comGF 1694353..1694850 (-) 498 WP_020977296.1 competence type IV pilus minor pilin ComGF Machinery gene
  D8S83_RS08415 comGE 1694768..1695067 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  D8S83_RS08420 comGD 1695054..1695500 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  D8S83_RS08425 comGC 1695478..1695789 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  D8S83_RS08430 comGB 1695803..1696873 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  D8S83_RS08435 comGA 1696845..1697819 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  D8S83_RS08440 - 1697871..1698494 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  D8S83_RS08445 - 1698491..1698820 (-) 330 WP_020977297.1 MTH1187 family thiamine-binding protein -
  D8S83_RS08450 - 1698820..1699806 (-) 987 WP_000161315.1 ROK family glucokinase -
  D8S83_RS08455 - 1699803..1700006 (-) 204 WP_000087561.1 YqgQ family protein -
  D8S83_RS08460 - 1699987..1701450 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41465.90 Da        Isoelectric Point: 10.1030

>NTDB_id=69127 D8S83_RS08430 WP_000776407.1 1695803..1696873(-) (comGB) [Staphylococcus aureus strain GN1]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIMVSILAIIMKLFYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=69127 D8S83_RS08430 WP_000776407.1 1695803..1696873(-) (comGB) [Staphylococcus aureus strain GN1]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCGTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATGGTATCTATATT
GGCTATTATTATGAAATTATTTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.596

100

0.986
  comGB Staphylococcus aureus N315

98.596

100

0.986

Multiple sequence alignment