Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OXA89_RS13985 Genome accession   NZ_CP113434
Coordinates   3143468..3144718 (+) Length   416 a.a.
NCBI ID   WP_027223979.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC027     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138468..3149718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA89_RS13950 (OXA89_13950) - 3138850..3139254 (+) 405 WP_011947629.1 DUF3775 domain-containing protein -
  OXA89_RS13955 (OXA89_13955) - 3139329..3139673 (-) 345 WP_011947630.1 hypothetical protein -
  OXA89_RS13960 (OXA89_13960) - 3139790..3140419 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  OXA89_RS13965 (OXA89_13965) - 3140629..3141123 (-) 495 WP_010948425.1 peptidylprolyl isomerase -
  OXA89_RS13970 (OXA89_13970) tgt 3141150..3142301 (-) 1152 WP_011947631.1 tRNA guanosine(34) transglycosylase Tgt -
  OXA89_RS13975 (OXA89_13975) - 3142363..3142854 (-) 492 WP_011947632.1 disulfide bond formation protein B -
  OXA89_RS13980 (OXA89_13980) - 3142851..3143279 (-) 429 WP_011947633.1 c-type cytochrome -
  OXA89_RS13985 (OXA89_13985) cqsA 3143468..3144718 (+) 1251 WP_027223979.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  OXA89_RS13990 (OXA89_13990) - 3144800..3145825 (-) 1026 WP_011947635.1 response regulator -
  OXA89_RS13995 (OXA89_13995) - 3146107..3146670 (+) 564 WP_011947637.1 HdeD family acid-resistance protein -
  OXA89_RS14000 (OXA89_14000) - 3146758..3148047 (-) 1290 WP_027223978.1 sensor histidine kinase -
  OXA89_RS14005 (OXA89_14005) hemC 3148437..3149366 (+) 930 WP_027223977.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46037.48 Da        Isoelectric Point: 8.8155

>NTDB_id=690996 OXA89_RS13985 WP_027223979.1 3143468..3144718(+) (cqsA) [Legionella pneumophila strain PATHC027]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCENKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLTAYADIARKFKCLLIVDESHSLGTHGSQGKGMV
ANLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=690996 OXA89_RS13985 WP_027223979.1 3143468..3144718(+) (cqsA) [Legionella pneumophila strain PATHC027]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGACGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCTGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCAGCCAATGTGAAAATAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGACTGCCTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAACCTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGGGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCGTGCGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGCATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCTTG
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

44.892

89.423

0.401