Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   HT081_RS05825 Genome accession   NZ_AP023073
Coordinates   1137379..1137990 (-) Length   203 a.a.
NCBI ID   WP_123771562.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15753     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132379..1142990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT081_RS05795 (TUM15753C_11310) yaaA 1133008..1133787 (-) 780 WP_003694987.1 peroxide stress protein YaaA -
  HT081_RS05800 (TUM15753C_11330) dapC 1133943..1135130 (-) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  HT081_RS05805 (TUM15753C_11340) dut 1135202..1135654 (-) 453 WP_172760504.1 dUTP diphosphatase -
  HT081_RS05810 (TUM15753C_11350) - 1135820..1136529 (+) 710 Protein_1129 AzlC family ABC transporter permease -
  HT081_RS05815 (TUM15753C_11360) - 1136526..1136834 (+) 309 WP_123771557.1 AzlD family protein -
  HT081_RS05820 (TUM15753C_11370) pilL 1136904..1137377 (-) 474 WP_172760509.1 PilX family type IV pilin Machinery gene
  HT081_RS05825 (TUM15753C_11380) pilK 1137379..1137990 (-) 612 WP_123771562.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HT081_RS05830 (TUM15753C_11390) pilJ 1137969..1138937 (-) 969 WP_172760505.1 PilW family protein Machinery gene
  HT081_RS05835 (TUM15753C_11400) pilV/pilI 1138934..1139542 (-) 609 WP_172760506.1 type IV pilus modification protein PilV Regulator
  HT081_RS05840 (TUM15753C_11410) pilH 1139574..1140239 (-) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT081_RS05845 (TUM15753C_11420) dnaB 1140496..1141899 (-) 1404 WP_012503477.1 replicative DNA helicase -
  HT081_RS05850 (TUM15753C_11430) - 1142062..1142643 (+) 582 WP_172760507.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21995.98 Da        Isoelectric Point: 8.0862

>NTDB_id=69099 HT081_RS05825 WP_123771562.1 1137379..1137990(-) (pilK) [Neisseria gonorrhoeae strain TUM15753]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPIVEAVKRSCPAKSGKNSTGLCIDNEGMEYKKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=69099 HT081_RS05825 WP_123771562.1 1137379..1137990(-) (pilK) [Neisseria gonorrhoeae strain TUM15753]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGTCTGTGCATTGACAATGAAGGGATGGAATATAAGAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.936

Multiple sequence alignment