Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8968_RS18805 Genome accession   NZ_CP097594
Coordinates   3819890..3820180 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0182     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3814890..3825180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8968_RS18790 - 3815111..3816436 (-) 1326 WP_087920785.1 G5 and 3D domain-containing protein -
  M8968_RS18795 - 3816571..3817338 (-) 768 WP_032872179.1 TatD family hydrolase -
  M8968_RS18800 metG 3817415..3819406 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  M8968_RS18805 abrB 3819890..3820180 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M8968_RS18810 rsmI 3820230..3821111 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M8968_RS18815 - 3821086..3821385 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M8968_RS18820 - 3821372..3822115 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M8968_RS18825 yabA 3822176..3822535 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  M8968_RS18830 ricT 3822550..3823377 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M8968_RS18835 holB 3823380..3824369 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  M8968_RS18840 - 3824381..3824821 (-) 441 WP_004264730.1 DUF327 family protein -
  M8968_RS18845 darA 3824834..3825163 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=690974 M8968_RS18805 WP_169510469.1 3819890..3820180(+) (abrB) [Bacillus velezensis strain UA0182]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=690974 M8968_RS18805 WP_169510469.1 3819890..3820180(+) (abrB) [Bacillus velezensis strain UA0182]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979