Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8962_RS16725 Genome accession   NZ_CP097591
Coordinates   3369824..3370114 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0188     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3364824..3375114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8962_RS16685 darA 3364841..3365170 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  M8962_RS16690 - 3365183..3365623 (+) 441 WP_011996167.1 DUF327 family protein -
  M8962_RS16695 holB 3365635..3366624 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  M8962_RS16700 ricT 3366627..3367454 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M8962_RS16705 yabA 3367469..3367828 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  M8962_RS16710 - 3367889..3368632 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M8962_RS16715 - 3368619..3368918 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M8962_RS16720 rsmI 3368893..3369774 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M8962_RS16725 abrB 3369824..3370114 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M8962_RS16730 metG 3370598..3372589 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  M8962_RS16735 - 3372665..3373432 (+) 768 WP_041482169.1 TatD family hydrolase -
  M8962_RS16740 - 3373567..3374892 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=690816 M8962_RS16725 WP_169510469.1 3369824..3370114(-) (abrB) [Bacillus velezensis strain UA0188]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=690816 M8962_RS16725 WP_169510469.1 3369824..3370114(-) (abrB) [Bacillus velezensis strain UA0188]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979