Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   STO1_RS08155 Genome accession   NZ_AP018338
Coordinates   1596995..1597708 (+) Length   237 a.a.
NCBI ID   WP_096422778.1    Uniprot ID   A0A223ZVV9
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1589005..1608032 1596995..1597708 within 0


Gene organization within MGE regions


Location: 1589005..1608032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08115 (STO1_015560) xerD 1589005..1589739 (-) 735 WP_331712420.1 site-specific tyrosine recombinase XerD -
  STO1_RS08120 (STO1_015570) cbpB 1589736..1590197 (-) 462 WP_000560694.1 cyclic-di-AMP-binding protein CbpB -
  STO1_RS08125 (STO1_015580) - 1590194..1590715 (-) 522 WP_049489957.1 metallophosphoesterase -
  STO1_RS08130 (STO1_015590) - 1590691..1591701 (-) 1011 WP_419865665.1 nucleoside-triphosphate diphosphatase -
  STO1_RS08135 (STO1_015600) racE 1591659..1592453 (-) 795 WP_000370379.1 glutamate racemase -
  STO1_RS08140 (STO1_015610) - 1592658..1592903 (-) 246 WP_000364980.1 YneF family protein -
  STO1_RS08145 (STO1_015620) treC 1593048..1594673 (-) 1626 WP_096422776.1 alpha,alpha-phosphotrehalase -
  STO1_RS08150 (STO1_015630) treP 1594737..1596704 (-) 1968 WP_000514302.1 PTS system trehalose-specific EIIBC component -
  STO1_RS08155 (STO1_015640) treR 1596995..1597708 (+) 714 WP_096422778.1 trehalose operon repressor Regulator
  STO1_RS08160 (STO1_015650) - 1597947..1603088 (+) 5142 WP_096422780.1 SIALI-17 repeat-containing surface protein -
  STO1_RS08165 (STO1_015660) mraY 1603158..1604138 (-) 981 WP_007522331.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  STO1_RS08170 (STO1_015670) pbp2X 1604140..1606395 (-) 2256 WP_096422782.1 penicillin-binding protein PBP2X -
  STO1_RS08175 (STO1_015680) ftsL 1606399..1606716 (-) 318 WP_000840795.1 cell division protein FtsL -
  STO1_RS08180 (STO1_015690) rsmH 1606727..1607677 (-) 951 WP_000159388.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  STO1_RS08185 (STO1_015700) - 1607838..1608032 (+) 195 WP_007522335.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27801.84 Da        Isoelectric Point: 6.7686

>NTDB_id=69075 STO1_RS08155 WP_096422778.1 1596995..1597708(+) (treR) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKYQQLFKQIQENIQNETYAIGEFLPSEHDLMNQYQVSRDTVRRALSLLQEEGLIKKIKGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNVTRQIAEHSIY
SYIEDDLKLLIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=69075 STO1_RS08155 WP_096422778.1 1596995..1597708(+) (treR) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAGAAATACCAACAATTATTTAAGCAAATACAAGAAAACATTCAAAATGAGACTTACGCTATCGGAGAGTTCCTTCC
TAGTGAGCACGACCTCATGAACCAATATCAAGTGAGTCGTGATACTGTCCGAAGGGCTCTTTCCTTACTCCAAGAGGAAG
GATTGATCAAAAAGATAAAAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTTCGCTCTAAGACTAATGTCGTCAGTCTGGACAAGATCATTATCGATAA
AAAGTCCTCACTGATAACCGGCTTTCCAGAGTTTAGGATGGTGTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGACCTAG
TATCGGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATGTCACTCGCCAAATTGCTGAGCATTCTATCTAT
TCTTATATAGAGGATGACCTCAAACTTCTTATTGATTATGCTCAAAAGGAAATCACTATCGATCATAGTAACGATAGGGA
CAAGATTCTCATGGACATAGGTAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAGTTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGGCATCCGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ZVV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574

Multiple sequence alignment