Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8970_RS02905 Genome accession   NZ_CP097590
Coordinates   532149..532433 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0195     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 527149..537433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8970_RS02885 - 528393..529301 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  M8970_RS02890 - 529331..530563 (-) 1233 WP_007409644.1 aminopeptidase -
  M8970_RS02895 - 530664..530798 (-) 135 WP_003154559.1 protein YkpC -
  M8970_RS02900 mreBH 530870..531877 (-) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  M8970_RS02905 abrB 532149..532433 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M8970_RS02910 - 532606..533910 (+) 1305 WP_032874761.1 ATP-binding protein -
  M8970_RS02915 - 533912..534739 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  M8970_RS02920 ktrC 534780..535445 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  M8970_RS02925 ade 535594..537327 (+) 1734 WP_032874763.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=690691 M8970_RS02905 WP_003154557.1 532149..532433(+) (abrB) [Bacillus velezensis strain UA0195]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=690691 M8970_RS02905 WP_003154557.1 532149..532433(+) (abrB) [Bacillus velezensis strain UA0195]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543