Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8966_RS10870 Genome accession   NZ_CP097589
Coordinates   2272603..2272893 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0311     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267603..2277893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8966_RS10855 - 2267825..2269150 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  M8966_RS10860 - 2269285..2270052 (-) 768 WP_041482169.1 TatD family hydrolase -
  M8966_RS10865 metG 2270128..2272119 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  M8966_RS10870 abrB 2272603..2272893 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M8966_RS10875 rsmI 2272943..2273824 (-) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M8966_RS10880 - 2273799..2274098 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M8966_RS10885 - 2274085..2274828 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M8966_RS10890 yabA 2274889..2275248 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  M8966_RS10895 ricT 2275263..2276090 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M8966_RS10900 holB 2276093..2277082 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  M8966_RS10905 - 2277094..2277534 (-) 441 WP_011996167.1 DUF327 family protein -
  M8966_RS10910 darA 2277547..2277876 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=690634 M8966_RS10870 WP_169510469.1 2272603..2272893(+) (abrB) [Bacillus velezensis strain UA0311]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=690634 M8966_RS10870 WP_169510469.1 2272603..2272893(+) (abrB) [Bacillus velezensis strain UA0311]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979