Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   M8966_RS05965 Genome accession   NZ_CP097589
Coordinates   1306094..1306558 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain UA0311     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301094..1311558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8966_RS05940 - 1301648..1302097 (-) 450 Protein_1187 hypothetical protein -
  M8966_RS05945 fadH 1302262..1303026 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  M8966_RS05950 - 1303171..1304034 (+) 864 WP_023356871.1 metallophosphoesterase -
  M8966_RS05955 - 1304109..1304603 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  M8966_RS05960 - 1304679..1305971 (+) 1293 WP_012117436.1 MFS transporter -
  M8966_RS05965 kre 1306094..1306558 (+) 465 WP_003154622.1 YkyB family protein Regulator
  M8966_RS05970 cheV 1306602..1307513 (-) 912 WP_012117435.1 chemotaxis protein CheV -
  M8966_RS05975 - 1307702..1307863 (+) 162 WP_007409608.1 hypothetical protein -
  M8966_RS05980 - 1308064..1309233 (+) 1170 WP_023356870.1 aminotransferase A -
  M8966_RS05985 - 1309258..1311078 (-) 1821 WP_023356869.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=690619 M8966_RS05965 WP_003154622.1 1306094..1306558(+) (kre) [Bacillus velezensis strain UA0311]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=690619 M8966_RS05965 WP_003154622.1 1306094..1306558(+) (kre) [Bacillus velezensis strain UA0311]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929