Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   M8966_RS05865 Genome accession   NZ_CP097589
Coordinates   1290141..1290737 (-) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0311     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285141..1295737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8966_RS05840 mobB 1285517..1286038 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  M8966_RS05845 glp 1285999..1287291 (-) 1293 WP_012117450.1 gephyrin-like molybdotransferase Glp -
  M8966_RS05850 - 1287309..1288328 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  M8966_RS05855 - 1288380..1288982 (-) 603 WP_012117449.1 molybdenum cofactor guanylyltransferase -
  M8966_RS05860 - 1289128..1290120 (+) 993 WP_012117448.1 hypothetical protein -
  M8966_RS05865 rok 1290141..1290737 (-) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  M8966_RS05870 - 1291190..1291648 (-) 459 WP_012117446.1 TlpA disulfide reductase family protein -
  M8966_RS05875 - 1291937..1292743 (+) 807 WP_012117445.1 mechanosensitive ion channel family protein -
  M8966_RS05880 - 1292777..1293022 (-) 246 WP_003154596.1 YkuS family protein -
  M8966_RS05885 - 1293083..1294207 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  M8966_RS05890 dapD 1294278..1294988 (-) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  M8966_RS05895 - 1295070..1295525 (-) 456 WP_012117442.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=690618 M8966_RS05865 WP_012117447.1 1290141..1290737(-) (rok) [Bacillus velezensis strain UA0311]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=690618 M8966_RS05865 WP_012117447.1 1290141..1290737(-) (rok) [Bacillus velezensis strain UA0311]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843