Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   OTB22_RS01745 Genome accession   NZ_CP113267
Coordinates   332093..333052 (-) Length   319 a.a.
NCBI ID   WP_000777236.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 327093..338052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS01715 (OTB22_01720) scpB 327592..328161 (+) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -
  OTB22_RS01720 (OTB22_01725) - 328148..328870 (+) 723 WP_001222228.1 pseudouridine synthase -
  OTB22_RS01725 (OTB22_01730) yidD 328870..329112 (+) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  OTB22_RS01730 (OTB22_01735) - 329337..330302 (-) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  OTB22_RS01735 (OTB22_01740) - 330398..331150 (-) 753 WP_000764303.1 ABC transporter ATP-binding protein -
  OTB22_RS01740 (OTB22_01745) - 331147..332103 (-) 957 WP_001193669.1 iron chelate uptake ABC transporter family permease subunit -
  OTB22_RS01745 (OTB22_01750) ceuB 332093..333052 (-) 960 WP_000777236.1 ABC transporter permease Machinery gene
  OTB22_RS11025 - 333349..333459 (-) 111 WP_001108391.1 hypothetical protein -
  OTB22_RS01750 (OTB22_01755) - 333475..334176 (-) 702 WP_000167845.1 NAD-dependent epimerase/dehydratase family protein -
  OTB22_RS01755 (OTB22_01760) pepA 334577..335641 (+) 1065 WP_000209199.1 glutamyl aminopeptidase -
  OTB22_RS01760 (OTB22_01765) - 335663..335959 (+) 297 WP_000840137.1 bacteriocin immunity protein -
  OTB22_RS01765 (OTB22_01770) - 336641..337084 (+) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  OTB22_RS01770 (OTB22_01775) - 337088..337852 (+) 765 WP_000082874.1 nuclear transport factor 2 family protein -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=690609 OTB22_RS01745 WP_000777236.1 332093..333052(-) (ceuB) [Streptococcus pneumoniae strain BC2]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=690609 OTB22_RS01745 WP_000777236.1 332093..333052(-) (ceuB) [Streptococcus pneumoniae strain BC2]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361