Detailed information NTG0690563

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: M8961_RS08985
• Genome accession: NZ_CP097588
• Coordinates: 1842072..1843220 (-)
• Length: 382 a.a.
• NCBI ID: WP_012116798.1
• Uniprot ID: A3KLC9
• Organism: Bacillus velezensis strain UA0323
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1837072..1848220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8961_RS08955	-	1837210..1837968 (-)	759	WP_012116804.1	ABC transporter ATP-binding protein	-
M8961_RS08960	-	1837962..1838909 (-)	948	WP_012116803.1	iron chelate uptake ABC transporter family permease subunit	-
M8961_RS08965	ceuB	1838899..1839852 (-)	954	WP_012116802.1	ABC transporter permease	Machinery gene
M8961_RS08970	-	1840266..1841630 (+)	1365	WP_012116801.1	aspartate kinase	-
M8961_RS08975	-	1841725..1841820 (+)	96	WP_012116800.1	YjcZ family sporulation protein	-
M8961_RS08980	phrC	1841969..1842088 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
M8961_RS08985	rapC	1842072..1843220 (-)	1149	WP_012116798.1	Rap family tetratricopeptide repeat protein	Regulator
M8961_RS08990	-	1843373..1844806 (-)	1434	WP_162303988.1	HAMP domain-containing sensor histidine kinase	-
M8961_RS08995	-	1844793..1845476 (-)	684	WP_007410267.1	response regulator transcription factor	-
M8961_RS09000	-	1845689..1847125 (+)	1437	WP_012116796.1	ABC transporter permease	-
M8961_RS09005	-	1847140..1847823 (+)	684	WP_012116795.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45490.68 Da
• Isoelectric Point: 4.9916

>NTDB_id=690563 M8961_RS08985 WP_012116798.1 1842072..1843220(-) (rapC) [Bacillus velezensis strain UA0323]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=690563 M8961_RS08985 WP_012116798.1 1842072..1843220(-) (rapC) [Bacillus velezensis strain UA0323]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

3D structure

• AlphaFold DB: A3KLC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	56.842	99.476	0.565