Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8961_RS05080 Genome accession   NZ_CP097588
Coordinates   1097026..1097316 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0323     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092026..1102316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8961_RS05065 - 1092248..1093573 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  M8961_RS05070 - 1093708..1094475 (-) 768 WP_041482169.1 TatD family hydrolase -
  M8961_RS05075 metG 1094551..1096542 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  M8961_RS05080 abrB 1097026..1097316 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M8961_RS05085 rsmI 1097366..1098247 (-) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M8961_RS05090 - 1098222..1098521 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M8961_RS05095 - 1098508..1099251 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M8961_RS05100 yabA 1099312..1099671 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  M8961_RS05105 ricT 1099686..1100513 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M8961_RS05110 holB 1100516..1101505 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  M8961_RS05115 - 1101517..1101957 (-) 441 WP_011996167.1 DUF327 family protein -
  M8961_RS05120 darA 1101970..1102299 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=690546 M8961_RS05080 WP_169510469.1 1097026..1097316(+) (abrB) [Bacillus velezensis strain UA0323]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=690546 M8961_RS05080 WP_169510469.1 1097026..1097316(+) (abrB) [Bacillus velezensis strain UA0323]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979