Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   STO1_RS03095 Genome accession   NZ_AP018338
Coordinates   614713..616974 (-) Length   753 a.a.
NCBI ID   WP_096421913.1    Uniprot ID   A0A224A5I4
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 609713..621974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS03070 (STO1_006000) metK 610810..612003 (+) 1194 WP_096421907.1 methionine adenosyltransferase -
  STO1_RS03075 (STO1_006010) - 612112..612411 (-) 300 WP_000767205.1 DUF1827 family protein -
  STO1_RS03080 (STO1_006020) - 612470..612922 (-) 453 WP_084851590.1 NUDIX hydrolase -
  STO1_RS03085 (STO1_006040) - 613099..614001 (+) 903 WP_096421909.1 helix-turn-helix transcriptional regulator -
  STO1_RS03090 (STO1_006050) - 614056..614670 (+) 615 WP_096421911.1 GyrI-like domain-containing protein -
  STO1_RS03095 (STO1_006060) clpE 614713..616974 (-) 2262 WP_096421913.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  STO1_RS03100 (STO1_006070) - 617214..617444 (-) 231 WP_000443577.1 DUF1797 family protein -
  STO1_RS03105 (STO1_006080) - 617635..618318 (+) 684 WP_001011622.1 amino acid ABC transporter permease -
  STO1_RS03110 (STO1_006090) - 618318..619052 (+) 735 WP_000140926.1 amino acid ABC transporter ATP-binding protein -
  STO1_RS03115 (STO1_006100) - 619086..619394 (+) 309 WP_096421915.1 TfoX/Sxy family protein -
  STO1_RS03120 (STO1_006110) - 619556..620413 (+) 858 WP_000057235.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  STO1_RS03125 (STO1_006120) - 620418..621191 (+) 774 WP_033605902.1 HAD hydrolase family protein -

Sequence


Protein


Download         Length: 753 a.a.        Molecular weight: 83971.32 Da        Isoelectric Point: 5.0340

>NTDB_id=69053 STO1_RS03095 WP_096421913.1 614713..616974(-) (clpE) [Streptococcus oralis subsp. tigurinus strain osk_001]
MLCQNCKINDSTIHLYTNINGQQKQIDLCQNCYKIIKTDPNNTLFKGMTDLNNRDFDPFGDFFNDLNNFRASSNNVPPTQ
SGGGYGGNGGYGPQNRGPVQTPPPSQERGLLEEYGINVTEIARRGDIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEPGV
GKTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKREDIILFIDEIHEIVGAGSAGD
GNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGVQKKYEDYHHVKYTDAAIE
AAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKAQATREEDFEKAAYFRDQIAKYKEMQK
NKVIDQDTPIISEKTIEHIIEQKTNIPVGELKEKEQSQLIHLADDLKAHVIGQDEAVDKIAKAIRRNRVGLGTPNRPIGS
FLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDEVE
KAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDG
IIEFKPLSKDNLLQIVELMLADVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDAITDFYLENPSE
KDLKAVMTSNGNIQIKSAKKTEKTEEIASEIEE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=69053 STO1_RS03095 WP_096421913.1 614713..616974(-) (clpE) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGCTCTGTCAAAACTGTAAAATTAACGACTCAACAATTCATCTGTATACCAATATCAATGGACAGCAAAAACAAATTGA
TCTCTGTCAAAATTGCTATAAAATTATCAAAACAGATCCAAATAATACCCTCTTTAAAGGAATGACTGACTTAAACAATC
GTGACTTTGATCCTTTTGGAGACTTTTTCAATGATTTGAACAATTTCAGGGCTTCTTCAAATAACGTCCCTCCAACTCAA
TCCGGTGGGGGATACGGAGGTAATGGGGGATACGGACCTCAAAACCGCGGACCTGTTCAAACACCTCCTCCTAGCCAAGA
AAGAGGGCTCCTAGAGGAATATGGTATCAACGTGACTGAAATAGCTCGTCGGGGAGATATTGACCCTGTTATAGGTCGAG
ATGAGGAGATTATCCGCGTTATCGAAATCCTCAACCGTCGAACCAAGAACAATCCTGTCCTTATCGGAGAACCAGGTGTT
GGTAAAACTGCCGTTGTCGAAGGTTTAGCTCAGAAGATTGTCGATGGTGATGTTCCCCACAAACTCCAAGGCAAGCAGGT
CATCCGTCTGGATGTAGTCAGTCTAGTCCAAGGGACAGGGATCCGAGGCCAATTTGAGGAACGTATGCAAAAACTCATGG
AAGAAATTCGCAAACGCGAGGACATCATCCTCTTTATCGATGAAATCCATGAAATTGTTGGCGCTGGATCTGCTGGCGAT
GGCAATATGGATGCAGGAAATATCCTCAAACCAGCCCTTGCCCGTGGTGAATTGCAACTGGTCGGCGCCACTACTCTCAA
TGAATACCGTATCATTGAAAAAGATGCTGCCCTCGAACGCCGTATGCAGCCTGTCAAGGTAGATGAACCAACTGTCGAAG
AAACCATTACCATCCTCAAAGGGGTTCAAAAGAAATACGAAGACTACCATCACGTCAAGTATACTGATGCTGCTATCGAA
GCTGCTGCAAATCTTTCCAACCGCTACATCCAAGATCGCTTCCTGCCAGACAAGGCTATTGACCTGTTGGATGAAGCTGG
TTCTAAGATGAATCTGACACTGAACTTTGTTGACCCTAAAGTGATTGATCAGCGTTTAATTGAAGCTGAGAATCTCAAGG
CTCAAGCTACACGAGAGGAAGATTTTGAAAAGGCTGCTTATTTCCGCGATCAGATTGCCAAGTACAAGGAAATGCAAAAG
AACAAGGTGATCGATCAGGATACTCCAATCATCAGCGAGAAAACTATTGAACATATCATTGAGCAGAAAACCAATATCCC
TGTTGGAGAACTCAAAGAAAAAGAACAGTCTCAGCTTATCCATCTAGCAGACGACCTCAAAGCTCATGTCATTGGTCAAG
ATGAAGCTGTCGATAAGATTGCTAAGGCCATCCGTCGTAATCGTGTTGGACTTGGAACTCCTAACCGCCCAATCGGAAGC
TTCCTCTTTGTCGGACCAACTGGTGTCGGTAAGACAGAACTTTCCAAACAACTAGCCATTGAGCTCTTTGGTTCTGCTGA
CAGCATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGTGTGGCTAAATTGGTCGGAGCCCCTCCAGGCTATG
TAGGCTATGACGAAGCTGGTCAACTGACTGAAAAAGTTCGTCGCAATCCTTACTCTCTCATCCTTCTCGATGAAGTTGAA
AAAGCCCACCCAGATGTGATGCACATGTTCCTTCAAGTATTGGACGATGGTCGTTTGACTGATGGGCAAGGACGAACAGT
TAGCTTTAAAGATGCTATCATTATCATGACTTCAAATGCGGGTACCGGTAAGGCCGAAGCCAGCGTTGGTTTTGGAGCTG
CTCGTGAAGGTCGAACCAACTCTGTCCTCGGTGAGCTCGGTAACTTCTTTAGCCCAGAGTTTATGAACCGTTTTGACGGC
ATCATCGAATTTAAACCTCTCAGCAAGGACAACCTTCTCCAAATCGTCGAACTCATGCTAGCGGATGTCAACAAACGCCT
CTCTAGCAACAACATCCATCTCGATGTGACAGACAAGGTCAAGGAAAAGTTGGTTGACTTAGGTTATGATCCAAAAATGG
GAGCACGCCCACTCCGCCGTACCATTCAAGACCATATCGAGGATGCCATAACAGACTTCTACCTTGAAAATCCAAGTGAA
AAAGACCTCAAGGCAGTTATGACAAGCAATGGCAATATTCAAATCAAATCTGCCAAAAAAACTGAGAAAACAGAAGAGAT
TGCTTCTGAAATAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A224A5I4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

95.161

98.805

0.94

  clpE Streptococcus pneumoniae D39

95.161

98.805

0.94

  clpE Streptococcus pneumoniae R6

95.161

98.805

0.94

  clpE Streptococcus pneumoniae TIGR4

95.027

98.805

0.939

  clpE Streptococcus mutans UA159

83.576

100

0.838

  clpC Lactococcus lactis subsp. cremoris KW2

76.058

100

0.764

  clpC Bacillus subtilis subsp. subtilis str. 168

52.615

86.321

0.454

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.166

83.267

0.401

  clpC Streptococcus pneumoniae TIGR4

47.343

82.47

0.39

  clpC Streptococcus pneumoniae Rx1

47.343

82.47

0.39

  clpC Streptococcus pneumoniae D39

47.343

82.47

0.39

  clpC Streptococcus thermophilus LMD-9

47.115

82.869

0.39

  clpC Streptococcus mutans UA159

46.571

83.267

0.388

  clpC Streptococcus thermophilus LMG 18311

46.87

82.736

0.388


Multiple sequence alignment