Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8961_RS02105 Genome accession   NZ_CP097588
Coordinates   557580..557864 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0323     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 552580..562864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8961_RS02085 ade 552686..554419 (-) 1734 WP_012117460.1 adenine deaminase -
  M8961_RS02090 ktrC 554568..555233 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  M8961_RS02095 - 555274..556101 (-) 828 WP_012117459.1 gamma-glutamylcyclotransferase family protein -
  M8961_RS02100 - 556103..557407 (-) 1305 WP_007409646.1 ATP-binding protein -
  M8961_RS02105 abrB 557580..557864 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M8961_RS02110 mreBH 558135..559142 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  M8961_RS02115 - 559214..559348 (+) 135 WP_012117458.1 protein YkpC -
  M8961_RS02120 - 559449..560681 (+) 1233 WP_012117457.1 aminopeptidase -
  M8961_RS02125 - 560713..561621 (-) 909 WP_012117456.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=690528 M8961_RS02105 WP_003154557.1 557580..557864(-) (abrB) [Bacillus velezensis strain UA0323]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=690528 M8961_RS02105 WP_003154557.1 557580..557864(-) (abrB) [Bacillus velezensis strain UA0323]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543