Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8957_RS06415 Genome accession   NZ_CP097587
Coordinates   1422043..1422327 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0276     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417043..1427327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8957_RS06395 ade 1417149..1418882 (-) 1734 WP_012117460.1 adenine deaminase -
  M8957_RS06400 ktrC 1419031..1419696 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  M8957_RS06405 - 1419737..1420564 (-) 828 WP_012117459.1 gamma-glutamylcyclotransferase family protein -
  M8957_RS06410 - 1420566..1421870 (-) 1305 WP_007409646.1 ATP-binding protein -
  M8957_RS06415 abrB 1422043..1422327 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M8957_RS06420 mreBH 1422598..1423605 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  M8957_RS06425 - 1423677..1423811 (+) 135 WP_012117458.1 protein YkpC -
  M8957_RS06430 - 1423912..1425144 (+) 1233 WP_012117457.1 aminopeptidase -
  M8957_RS06435 - 1425176..1426084 (-) 909 WP_012117456.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=690473 M8957_RS06415 WP_003154557.1 1422043..1422327(-) (abrB) [Bacillus velezensis strain UA0276]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=690473 M8957_RS06415 WP_003154557.1 1422043..1422327(-) (abrB) [Bacillus velezensis strain UA0276]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543