Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M8957_RS01400 Genome accession   NZ_CP097587
Coordinates   278735..279172 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0276     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 273735..284172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8957_RS01385 - 276593..276955 (-) 363 WP_012116770.1 helix-turn-helix domain-containing protein -
  M8957_RS01390 hxlA 277187..277822 (+) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  M8957_RS01395 hxlB 277819..278376 (+) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  M8957_RS01400 nucA/comI 278735..279172 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M8957_RS01405 nin/comJ 279193..279591 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  M8957_RS01410 - 279632..281068 (-) 1437 WP_012116768.1 family 1 glycosylhydrolase -
  M8957_RS01415 - 281172..281495 (-) 324 WP_007409357.1 YckD family protein -
  M8957_RS01420 - 281568..282002 (-) 435 WP_012116767.1 RDD family protein -
  M8957_RS01425 - 282017..283153 (-) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=690454 M8957_RS01400 WP_003156588.1 278735..279172(+) (nucA/comI) [Bacillus velezensis strain UA0276]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=690454 M8957_RS01400 WP_003156588.1 278735..279172(+) (nucA/comI) [Bacillus velezensis strain UA0276]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641