Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M8964_RS15765 Genome accession   NZ_CP097585
Coordinates   3178773..3179063 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA1365     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3173773..3184063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS15725 darA 3173790..3174119 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  M8964_RS15730 - 3174132..3174572 (+) 441 WP_011996167.1 DUF327 family protein -
  M8964_RS15735 holB 3174584..3175573 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  M8964_RS15740 ricT 3175576..3176403 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  M8964_RS15745 yabA 3176418..3176777 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  M8964_RS15750 - 3176838..3177581 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M8964_RS15755 - 3177568..3177867 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  M8964_RS15760 rsmI 3177842..3178723 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M8964_RS15765 abrB 3178773..3179063 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  M8964_RS15770 metG 3179547..3181538 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  M8964_RS15775 - 3181614..3182381 (+) 768 WP_041482169.1 TatD family hydrolase -
  M8964_RS15780 - 3182516..3183841 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=690438 M8964_RS15765 WP_169510469.1 3178773..3179063(-) (abrB) [Bacillus velezensis strain UA1365]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=690438 M8964_RS15765 WP_169510469.1 3178773..3179063(-) (abrB) [Bacillus velezensis strain UA1365]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979