Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ORP33_RS10385 Genome accession   NZ_CP113256
Coordinates   2075051..2076826 (-) Length   591 a.a.
NCBI ID   WP_225722015.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070051..2081826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS10365 (ORP33_10145) desE 2070422..2071480 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  ORP33_RS10370 (ORP33_10150) desK 2071600..2072712 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  ORP33_RS10375 (ORP33_10155) desR 2072731..2073330 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ORP33_RS10380 (ORP33_10160) walN 2073940..2074803 (-) 864 WP_003231267.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  ORP33_RS10385 (ORP33_10165) recQ 2075051..2076826 (-) 1776 WP_225722015.1 DNA helicase RecQ Machinery gene
  ORP33_RS10395 (ORP33_10175) azoJ 2077389..2078015 (-) 627 WP_225722016.1 FMN-dependent NADH-azoreductase AzoJ -
  ORP33_RS10400 (ORP33_10180) stpP 2078166..2078657 (-) 492 WP_225722017.1 TraR/DksA family transcriptional regulator -
  ORP33_RS10405 (ORP33_10185) - 2078730..2079062 (-) 333 WP_076458018.1 hypothetical protein -
  ORP33_RS10410 (ORP33_10190) - 2079140..2079367 (+) 228 WP_015383862.1 hypothetical protein -
  ORP33_RS10415 (ORP33_10195) yocM 2079354..2079830 (-) 477 WP_225722018.1 salt stress-responsive protein YocM -
  ORP33_RS10420 (ORP33_10200) - 2079897..2080160 (+) 264 WP_004399338.1 hypothetical protein -
  ORP33_RS10425 (ORP33_10205) - 2080165..2080398 (+) 234 WP_003231251.1 hypothetical protein -
  ORP33_RS10430 (ORP33_10210) yozO 2080478..2080822 (-) 345 WP_003220141.1 PH domain-containing protein -
  ORP33_RS10435 (ORP33_10215) yozC 2081179..2081382 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67528.09 Da        Isoelectric Point: 6.1787

>NTDB_id=690407 ORP33_RS10385 WP_225722015.1 2075051..2076826(-) (recQ) [Bacillus subtilis strain K1]
MLHRAQSLLAHYFGYEKLRNGQEEAIRSVTEERRNTVCIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGIKAAYINSTQSSQEIYERLTGLKEGAYKLFYITPERLTSPEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDNPVIMALTATATPEVHEDICKQLHIQKENTVYTGFSRDNLTFKVAKGENKDRFIDEYVQNNKHEAGIIYTATR
KEADRIYERLKRNRVNAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLDSECVLLFSPQDIIVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RMAHDVTREAQMVLSCMIRMKERFGKMMVAQVLAGSKNKKVLENGFADLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLRGELSVTRKEALKAASITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=690407 ORP33_RS10385 WP_225722015.1 2075051..2076826(-) (recQ) [Bacillus subtilis strain K1]
ATGTTACATAGAGCCCAATCCCTTCTGGCCCATTATTTCGGTTATGAAAAGCTCCGCAATGGCCAAGAAGAAGCGATCCG
CTCGGTGACGGAAGAAAGACGAAATACCGTCTGCATTATGCCGACGGGAGGAGGCAAATCAATTTGCTATCAAATTCCGG
CACTCATGTTTGAAGGGACTACGATCGTTATTTCGCCGTTGATTTCCTTGATGAAGGATCAAGTCGATGCGTTAGAAGAA
GCGGGGATTAAGGCCGCGTACATTAACAGCACACAATCGAGTCAGGAAATATATGAAAGGCTGACTGGGCTTAAAGAAGG
GGCCTATAAGCTATTTTACATTACACCGGAGCGATTAACGTCACCGGAGTTTATTCGGATTTTGCAGGGCATTGATGTCC
CTTTGGTTGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGAAATATTGAAATT
TTATTCCGTGAATTACATGACAATCCTGTCATCATGGCATTAACAGCAACAGCAACCCCTGAGGTACACGAGGATATCTG
CAAACAGCTGCACATACAAAAAGAAAACACCGTATATACCGGATTTTCCCGAGACAATTTAACCTTTAAAGTAGCAAAGG
GAGAAAATAAGGATCGTTTTATTGACGAGTATGTTCAAAACAACAAACATGAAGCTGGCATTATCTATACAGCGACCAGA
AAAGAAGCTGACCGGATTTATGAGCGATTAAAAAGAAATCGGGTCAATGCAGGGCGGTATCACGGAGGCTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTGCAAGTGATGGTGGCAACCTCTGCTTTCGGAATGGGCA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTACTATCAAGAGGCCGGACGG
GCTGGACGGGACGGTCTTGACAGCGAGTGCGTTCTCCTGTTTTCACCGCAGGATATTATAGTGCAGCGTTTTTTAATTGA
ACAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGGCAAATGGTCGACTATTGTCACACGGAAGACT
GTCTGCAGCGTTTTATCCTTATGTACTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGCACTGATACA
AGGATGGCTCATGACGTGACACGGGAGGCGCAAATGGTCTTATCGTGTATGATTCGCATGAAGGAACGCTTTGGTAAGAT
GATGGTTGCCCAAGTGCTCGCCGGATCTAAAAATAAAAAAGTTCTTGAAAACGGCTTTGCCGATCTCTCAACATATGGGA
TATTAAAACATCAATCCGTAGGGGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGATTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAGAGGAGAATTATCAGTAACGAGAAAAGAAGC
GCTAAAAGCGGCCTCGATTACTGAAAATGACGAGCTGTTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(518-583)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(404-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

95.262

100

0.953