Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8964_RS01410 Genome accession   NZ_CP097585
Coordinates   268160..268849 (+) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA1365     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263160..273849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS01385 degS 263444..264607 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M8964_RS01390 degU 264684..265373 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8964_RS01395 - 265471..266319 (+) 849 WP_003151387.1 DegV family protein -
  M8964_RS01400 comFA 266427..267812 (+) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8964_RS01405 - 267870..268154 (+) 285 WP_007407481.1 competence protein ComFB -
  M8964_RS01410 comFC 268160..268849 (+) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8964_RS01415 - 268923..269342 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8964_RS01420 flgM 269412..269678 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8964_RS01425 - 269693..270175 (+) 483 WP_003151394.1 flagellar protein FlgN -
  M8964_RS01430 flgK 270191..271708 (+) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  M8964_RS01435 flgL 271720..272637 (+) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  M8964_RS01440 - 272728..273297 (+) 570 WP_023357152.1 DUF6470 family protein -
  M8964_RS01445 fliW 273327..273758 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=690382 M8964_RS01410 WP_197197403.1 268160..268849(+) (comFC) [Bacillus velezensis strain UA1365]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690382 M8964_RS01410 WP_197197403.1 268160..268849(+) (comFC) [Bacillus velezensis strain UA1365]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594