Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M0646_RS02950 Genome accession   NZ_CP097584
Coordinates   582070..582321 (-) Length   83 a.a.
NCBI ID   WP_286649846.1    Uniprot ID   -
Organism   Thermosynechococcus sp. B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 577070..587321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0646_RS02925 (M0646_02920) csaB 577151..578170 (-) 1020 WP_149818000.1 polysaccharide pyruvyl transferase CsaB -
  M0646_RS02930 (M0646_02925) - 578167..578862 (-) 696 WP_149818002.1 sirohydrochlorin chelatase -
  M0646_RS02935 (M0646_02930) hisS 578859..580127 (-) 1269 WP_206199470.1 histidine--tRNA ligase -
  M0646_RS02940 (M0646_02935) - 580169..580534 (-) 366 WP_206199471.1 resolvase -
  M0646_RS02945 (M0646_02940) recN 580602..582101 (-) 1500 WP_286649845.1 DNA repair protein RecN -
  M0646_RS02950 (M0646_02945) recN 582070..582321 (-) 252 WP_286649846.1 AAA family ATPase Machinery gene
  M0646_RS02955 (M0646_02950) crtR 582476..583360 (+) 885 WP_399374963.1 beta-carotene hydroxylase -
  M0646_RS02960 (M0646_02955) - 583375..584334 (+) 960 WP_286649848.1 ABC transporter ATP-binding protein -
  M0646_RS02965 (M0646_02960) - 584390..585628 (+) 1239 WP_286649849.1 endo-1,4-beta-xylanase -

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 8889.25 Da        Isoelectric Point: 6.9769

>NTDB_id=690361 M0646_RS02950 WP_286649846.1 582070..582321(-) (recN) [Thermosynechococcus sp. B3]
MLQTLRIQNFALVAELEVTFQRGLNVLTGETGAGKSILLDAIDALLGGKLSARQLRSGTEQGCIEAIFTLTPPSERLAGH
PRN

Nucleotide


Download         Length: 252 bp        

>NTDB_id=690361 M0646_RS02950 WP_286649846.1 582070..582321(-) (recN) [Thermosynechococcus sp. B3]
ATGCTACAAACGCTGCGGATTCAGAACTTTGCCCTCGTTGCGGAGCTAGAGGTGACCTTTCAGCGGGGGTTGAATGTCCT
CACGGGGGAAACGGGGGCAGGCAAGTCGATTCTCCTCGATGCCATTGATGCTCTCCTTGGGGGGAAGCTCTCGGCGCGGC
AATTGCGATCGGGGACAGAGCAGGGCTGTATCGAAGCTATTTTCACCCTGACCCCCCCCAGTGAGAGACTGGCTGGCCAC
CCTAGAAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(5-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.617

97.59

0.494