Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ORP33_RS04205 Genome accession   NZ_CP113256
Coordinates   826349..827065 (+) Length   238 a.a.
NCBI ID   WP_225721909.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 821349..832065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS04190 (ORP33_04120) yfkQ 821426..822967 (-) 1542 WP_213415015.1 spore germination protein -
  ORP33_RS04195 (ORP33_04125) treP 823160..824572 (+) 1413 WP_033883257.1 PTS system trehalose-specific EIIBC component -
  ORP33_RS04200 (ORP33_04130) treC 824643..826328 (+) 1686 WP_225721908.1 alpha,alpha-phosphotrehalase -
  ORP33_RS04205 (ORP33_04135) treR 826349..827065 (+) 717 WP_225721909.1 trehalose operon repressor Regulator
  ORP33_RS04210 (ORP33_04140) hypO 827205..827870 (+) 666 WP_003243096.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27887.86 Da        Isoelectric Point: 7.1737

>NTDB_id=690354 ORP33_RS04205 WP_225721909.1 826349..827065(+) (treR) [Bacillus subtilis strain K1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDMWEVIRSRKIDGEHVILDRDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=690354 ORP33_RS04205 WP_225721909.1 826349..827065(+) (treR) [Bacillus subtilis strain K1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTAGATGACGACATGTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAGGGATTATTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416