NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	M8286_RS09205	Genome accession	NZ_CP097577
Coordinates	1903754..1905121 (-)	Length	455 a.a.
NCBI ID	WP_029172883.1	Uniprot ID	-
Organism	Streptococcus suis strain 3112
Function	homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1897239..1916986	1903754..1905121	within	0

Gene organization within MGE regions

Location: 1897239..1916986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8286_RS09170 (M8286_09325)	-	1897564..1897926 (+)	363	WP_275601013.1	MerR family transcriptional regulator	-
M8286_RS09175 (M8286_09330)	gltX	1897967..1899421 (-)	1455	WP_275601014.1	glutamate--tRNA ligase	-
M8286_RS09180 (M8286_09335)	-	1899493..1900791 (-)	1299	WP_275601015.1	MFS transporter	-
M8286_RS09185 (M8286_09340)	-	1900882..1901541 (-)	660	WP_275601016.1	hypothetical protein	-
M8286_RS09190 (M8286_09345)	-	1901546..1901992 (-)	447	WP_012775372.1	LytTR family DNA-binding domain-containing protein	-
M8286_RS09195 (M8286_09350)	-	1902170..1902928 (-)	759	WP_002939965.1	TIGR00266 family protein	-
M8286_RS09200 (M8286_09355)	-	1903136..1903630 (-)	495	WP_275601017.1	carbonic anhydrase	-
M8286_RS09205 (M8286_09360)	radA	1903754..1905121 (-)	1368	WP_029172883.1	DNA repair protein RadA	Machinery gene
M8286_RS09210 (M8286_09365)	-	1905128..1905661 (-)	534	WP_275601018.1	histidine phosphatase family protein	-
M8286_RS09215 (M8286_09370)	-	1905668..1906111 (-)	444	WP_358636515.1	dUTP diphosphatase	-
M8286_RS09220 (M8286_09375)	-	1906140..1906664 (-)	525	WP_275601020.1	hypothetical protein	-
M8286_RS09225 (M8286_09380)	-	1906758..1907624 (-)	867	WP_275601021.1	helix-turn-helix transcriptional regulator	-
M8286_RS09230 (M8286_09385)	-	1907915..1908199 (+)	285	WP_275601022.1	lactococcin 972 family bacteriocin	-
M8286_RS09235 (M8286_09390)	-	1908405..1910513 (+)	2109	WP_275601023.1	amino acid ABC transporter permease	-
M8286_RS09240 (M8286_09395)	-	1910510..1911139 (+)	630	WP_275601024.1	ABC transporter ATP-binding protein	-
M8286_RS09245 (M8286_09400)	-	1911366..1913150 (-)	1785	WP_275601025.1	ABC transporter ATP-binding protein	-
M8286_RS09250 (M8286_09405)	-	1913151..1914857 (-)	1707	WP_275601026.1	ABC transporter ATP-binding protein	-
M8286_RS09255 (M8286_09410)	-	1914850..1915299 (-)	450	WP_053867167.1	MarR family winged helix-turn-helix transcriptional regulator	-
M8286_RS09260 (M8286_09415)	-	1915521..1916537 (+)	1017	WP_014638751.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 49871.34 Da Isoelectric Point: 5.8748

                                >NTDB_id=690352 M8286_RS09205 WP_029172883.1 1903754..1905121(-) (radA) [Streptococcus suis strain 3112]

MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN

RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE

IEKIQPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG

ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN

AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE

IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=690352 M8286_RS09205 WP_029172883.1 1903754..1905121(-) (radA) [Streptococcus suis strain 3112]

ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC

AAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG

AGAAGACCCGACCTATGAAACTCAATGAAGTTTCCTCTATTCAAGTGGCCCGCACCAAGACCAACATGGAGGAGTTCAAC

CGTGTCCTCGGTGGCGGTGTGGTGCCGGGTAGCCTGGTCCTGATCGGTGGTGATCCAGGGATTGGCAAATCCACCCTGCT

CTTACAGGTATCGACCCAGCTTTCGACCATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAAT

TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAAACCAATATGCAGAGCATTCGGACTGAG

ATTGAGAAGATTCAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG

CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG

GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTGGATACTGTTCTCTATTTTGAGGGC

GAGCGGCAGCACACTTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT

GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG

CCATTGTTGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTACAGGCTCTGGTGACGCCGACTATGTTTGGCAAT

GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT

CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG

TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGTTTTATAGGCGAAATTGGTCTGACAGGCGAA

ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGTTTTACTAAGGTTTATGCCCCTAAAAA

TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACAACCATTGGCGAAGTCTTGCAGAAAGTAT

TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Streptococcus mitis NCTC 12261	91.593	99.341	0.91
radA	Streptococcus pneumoniae Rx1	91.372	99.341	0.908
radA	Streptococcus pneumoniae D39	91.372	99.341	0.908
radA	Streptococcus pneumoniae R6	91.372	99.341	0.908
radA	Streptococcus pneumoniae TIGR4	91.372	99.341	0.908
radA	Streptococcus mitis SK321	91.15	99.341	0.905
radA	Bacillus subtilis subsp. subtilis str. 168	62.693	99.56	0.624

Detailed information NTG0690352