Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   M8286_RS08360 Genome accession   NZ_CP097577
Coordinates   1718538..1720325 (-) Length   595 a.a.
NCBI ID   WP_275600906.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713538..1725325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS08340 (M8286_08475) opp4B 1714015..1714971 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  M8286_RS08345 (M8286_08480) - 1714973..1715914 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  M8286_RS08350 (M8286_08485) - 1715917..1716915 (-) 999 WP_275600904.1 ABC transporter ATP-binding protein -
  M8286_RS08355 (M8286_08490) - 1717536..1718489 (+) 954 WP_275600905.1 IS30 family transposase -
  M8286_RS08360 (M8286_08495) oppA 1718538..1720325 (-) 1788 WP_275600906.1 oligopeptide ABC transporter substrate-binding protein Regulator
  M8286_RS08365 (M8286_08500) pbp3 1720538..1721779 (+) 1242 WP_275600907.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  M8286_RS08370 (M8286_08505) sufB 1722164..1723579 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  M8286_RS08375 (M8286_08510) sufU 1723762..1724202 (-) 441 WP_275600908.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65502.23 Da        Isoelectric Point: 4.4290

>NTDB_id=690348 M8286_RS08360 WP_275600906.1 1718538..1720325(-) (oppA) [Streptococcus suis strain 3112]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELIVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYNPEKAKK
LLDGAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=690348 M8286_RS08360 WP_275600906.1 1718538..1720325(-) (oppA) [Streptococcus suis strain 3112]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCCGCTGAAGTAAAACAAGATGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTACACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGATTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAATGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGCGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTTTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAA
CTCTTGGATGGAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTGCAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAATTGTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTATGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AAAACTACAAGGCATGGCAAAAATATGCTCACGAGCAAGCATTTGCAATTCCTACATTTGAATCTGAGTCAATCACTGCC
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.749

99.664

0.924