Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   M8286_RS08295 Genome accession   NZ_CP097577
Coordinates   1707072..1707806 (-) Length   244 a.a.
NCBI ID   WP_024406554.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702072..1712806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS08265 (M8286_08400) - 1702260..1702556 (-) 297 WP_002942375.1 YlxR family protein -
  M8286_RS08270 (M8286_08405) nusA 1702573..1703715 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  M8286_RS08275 (M8286_08410) rimP 1703788..1704258 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  M8286_RS08280 (M8286_08415) trmB 1704556..1705194 (-) 639 WP_024406557.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  M8286_RS08285 (M8286_08420) ccrZ 1705191..1705985 (-) 795 WP_029188407.1 cell cycle regulator CcrZ -
  M8286_RS08290 (M8286_08425) - 1706035..1707075 (-) 1041 WP_275600899.1 ABC transporter permease -
  M8286_RS08295 (M8286_08430) pptA 1707072..1707806 (-) 735 WP_024406554.1 ABC transporter ATP-binding protein Regulator
  M8286_RS08300 (M8286_08435) - 1707869..1708282 (+) 414 WP_275600900.1 HIT family protein -
  M8286_RS08305 (M8286_08440) - 1708284..1708586 (+) 303 WP_275600901.1 chemotaxis protein -
  M8286_RS08310 (M8286_08445) - 1708695..1709888 (-) 1194 WP_024379502.1 LCP family protein -
  M8286_RS08315 (M8286_08450) - 1709885..1710412 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  M8286_RS08320 (M8286_08455) tsaE 1710405..1710845 (-) 441 WP_358639450.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  M8286_RS08325 (M8286_08460) - 1710946..1712610 (-) 1665 WP_275600903.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26862.13 Da        Isoelectric Point: 4.3606

>NTDB_id=690347 M8286_RS08295 WP_024406554.1 1707072..1707806(-) (pptA) [Streptococcus suis strain 3112]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLITLLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=690347 M8286_RS08295 WP_024406554.1 1707072..1707806(-) (pptA) [Streptococcus suis strain 3112]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGCTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
ACAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCACTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAACTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721