Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   M8286_RS07550 Genome accession   NZ_CP097577
Coordinates   1554673..1556448 (-) Length   591 a.a.
NCBI ID   WP_275600823.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549673..1561448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS07530 (M8286_07650) - 1550934..1551587 (-) 654 WP_275600820.1 phosphatase PAP2 family protein -
  M8286_RS07535 (M8286_07655) - 1551612..1552169 (-) 558 WP_275600821.1 ECF transporter S component -
  M8286_RS07540 (M8286_07660) - 1552494..1553039 (-) 546 WP_002939238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  M8286_RS07545 (M8286_07670) - 1553409..1554362 (-) 954 WP_275600905.1 IS30 family transposase -
  M8286_RS07550 (M8286_07675) oppA 1554673..1556448 (-) 1776 WP_275600823.1 oligopeptide ABC transporter substrate-binding protein Regulator
  M8286_RS07555 (M8286_07680) yidD 1557087..1557326 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  M8286_RS07560 (M8286_07685) - 1557326..1558057 (-) 732 WP_012027615.1 pseudouridine synthase -
  M8286_RS07565 (M8286_07690) scpB 1558047..1558616 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  M8286_RS07570 (M8286_07695) - 1558600..1559319 (-) 720 WP_002942755.1 segregation/condensation protein A -
  M8286_RS07575 (M8286_07700) xerD 1559319..1560050 (-) 732 WP_275600824.1 site-specific tyrosine recombinase XerD -
  M8286_RS07580 (M8286_07705) cbpB 1560047..1560505 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  M8286_RS07585 (M8286_07710) - 1560502..1561029 (-) 528 WP_275600825.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65401.96 Da        Isoelectric Point: 4.2025

>NTDB_id=690344 M8286_RS07550 WP_275600823.1 1554673..1556448(-) (oppA) [Streptococcus suis strain 3112]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGEAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPEHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYGPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=690344 M8286_RS07550 WP_275600823.1 1554673..1556448(-) (oppA) [Streptococcus suis strain 3112]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATTGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCAATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGGAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGTTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAAGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGTGTACCTTATTTAGTCATGCCGGAACACATTTTTAAAG
ACATTGCAGTCAAAGACTGGGAGTCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGGACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGACAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTCGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAACAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAGAAACTTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAACAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGACGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGATCCGACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGATAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.825

100

0.662