Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M8286_RS03555 Genome accession   NZ_CP097577
Coordinates   726103..727905 (+) Length   600 a.a.
NCBI ID   WP_358639142.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 721103..732905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS03535 (M8286_03555) - 722131..722724 (-) 594 WP_275601496.1 DUF1361 domain-containing protein -
  M8286_RS03540 (M8286_03560) metG 722880..724883 (+) 2004 WP_275601497.1 methionine--tRNA ligase -
  M8286_RS03545 (M8286_03565) coiA 724944..725888 (+) 945 WP_275601498.1 competence protein CoiA family protein Machinery gene
  M8286_RS03550 (M8286_03570) - 725889..725993 (+) 105 Protein_651 transcriptional regulator -
  M8286_RS03555 (M8286_03575) pepF 726103..727905 (+) 1803 WP_358639142.1 oligoendopeptidase F Regulator
  M8286_RS03560 (M8286_03580) - 727907..728353 (+) 447 WP_208498467.1 hypothetical protein -
  M8286_RS03565 (M8286_03585) - 728364..728912 (+) 549 WP_275601499.1 DUF6630 family protein -
  M8286_RS03570 (M8286_03590) - 728987..729706 (+) 720 WP_043034995.1 O-methyltransferase -
  M8286_RS03575 (M8286_03595) prsA 729768..730769 (+) 1002 WP_044751382.1 peptidylprolyl isomerase PrsA -
  M8286_RS03580 (M8286_03600) - 730978..731463 (+) 486 WP_275601500.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69246.49 Da        Isoelectric Point: 4.5800

>NTDB_id=690333 M8286_RS03555 WP_358639142.1 726103..727905(+) (pepF) [Streptococcus suis strain 3112]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSIFSQAFAFYEPEFMAITEEKLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLDIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=690333 M8286_RS03555 WP_358639142.1 726103..727905(+) (pepF) [Streptococcus suis strain 3112]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCTTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGTTTGTATTCGATCTTTTCACAAGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGAAATTGGAAGCCTTTAAGGCAGAAGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAAATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGTCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGAAGTCCGTCAAGAAG
CCTATGAGGCTATGTACGGTACCTACGAGCAGTTCCAACATACCTACGCTAAGACTCTGCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCAGCTCGTCACGCATCACTTGCAGCCAATTTTATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAATAAGCACCTTCCACTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGATA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCACTTAAG
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTTTGAAAACCGCTGGATTGA
CGTCCATGTCAATGAAGGTAAACGCTCAGGCGCCTATTCAGGTGGTGCTTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTCTTCTTGGCTGAAATTGCTTCAACAACTAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCCATTCTCAACCATTACCTAGATGGATTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCAATCTACAAGGCAGACCAGGAAGGTCAAGTTTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACATTTCTATTATAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGACTATCTTAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697