Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   M8286_RS01150 Genome accession   NZ_CP097577
Coordinates   220004..220717 (+) Length   237 a.a.
NCBI ID   WP_275601230.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 215004..225717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS01140 (M8286_01150) treC 215808..217433 (-) 1626 WP_358637945.1 alpha,alpha-phosphotrehalase -
  M8286_RS01145 (M8286_01155) treP 217777..219771 (-) 1995 WP_275601229.1 PTS system trehalose-specific EIIBC component -
  M8286_RS01150 (M8286_01160) treR 220004..220717 (+) 714 WP_275601230.1 trehalose operon repressor Regulator
  M8286_RS01155 (M8286_01165) - 220775..221086 (+) 312 WP_172020436.1 hypothetical protein -
  M8286_RS01160 (M8286_01170) - 221083..221631 (+) 549 WP_275601231.1 CvpA family protein -
  M8286_RS01165 (M8286_01175) - 221972..224305 (+) 2334 WP_358637950.1 endonuclease MutS2 -
  M8286_RS01170 (M8286_01180) - 224329..224982 (+) 654 WP_044668969.1 GNAT family N-acetyltransferase -
  M8286_RS01175 (M8286_01185) trxA 225349..225663 (+) 315 WP_002941035.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27122.01 Da        Isoelectric Point: 6.2750

>NTDB_id=690320 M8286_RS01150 WP_275601230.1 220004..220717(+) (treR) [Streptococcus suis strain 3112]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGCGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFELYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=690320 M8286_RS01150 WP_275601230.1 220004..220717(+) (treR) [Streptococcus suis strain 3112]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GGTTGATTCAAAAAGTGCAAGGGTGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCTGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515