Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HT078_RS06125 Genome accession   NZ_AP023071
Coordinates   1182881..1183546 (-) Length   221 a.a.
NCBI ID   WP_003701057.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1177881..1188546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS06090 (TUM15748C_11980) dut 1178509..1178961 (-) 453 WP_172760504.1 dUTP diphosphatase -
  HT078_RS06095 (TUM15748C_11990) - 1179127..1179836 (+) 710 Protein_1191 AzlC family ABC transporter permease -
  HT078_RS06100 (TUM15748C_12000) - 1179833..1180141 (+) 309 WP_123771557.1 AzlD family protein -
  HT078_RS06105 (TUM15748C_12010) pilL 1180211..1180684 (-) 474 WP_172760509.1 PilX family type IV pilin Machinery gene
  HT078_RS06110 (TUM15748C_12020) pilK 1180686..1181297 (-) 612 WP_123771562.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HT078_RS06115 (TUM15748C_12030) pilJ 1181276..1182244 (-) 969 WP_172760505.1 PilW family protein Machinery gene
  HT078_RS06120 (TUM15748C_12040) pilV/pilI 1182241..1182849 (-) 609 WP_172760506.1 type IV pilus modification protein PilV Regulator
  HT078_RS06125 (TUM15748C_12050) pilH 1182881..1183546 (-) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT078_RS06130 (TUM15748C_12060) dnaB 1183803..1185206 (-) 1404 WP_012503477.1 replicative DNA helicase -
  HT078_RS06135 (TUM15748C_12070) - 1185369..1185950 (+) 582 WP_172760507.1 superoxide dismutase -
  HT078_RS06140 (TUM15748C_12080) - 1186180..1186689 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  HT078_RS06145 (TUM15748C_12090) - 1187016..1187348 (-) 333 WP_003687908.1 hypothetical protein -
  HT078_RS06150 (TUM15748C_12100) cysT 1187529..1188367 (+) 839 Protein_1202 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24658.11 Da        Isoelectric Point: 9.1564

>NTDB_id=69032 HT078_RS06125 WP_003701057.1 1182881..1183546(-) (pilH) [Neisseria gonorrhoeae strain TUM15748]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPTQVKKDGTGN
NQCDLGKKEQGMLAFGDKNDNKAYDGDAADVFLRSVVLNDDIKDKRIDYTFNHIAFGQTRPTADRVVWTFNQNGTFGYLP
DQNLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=69032 HT078_RS06125 WP_003701057.1 1182881..1183546(-) (pilH) [Neisseria gonorrhoeae strain TUM15748]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCAATGCGACCTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGACCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGCCC
GATCAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.14

100

0.891

Multiple sequence alignment