Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   OUY06_RS06755 Genome accession   NZ_CP113247
Coordinates   1331099..1331812 (+) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326099..1336812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS06735 - 1326471..1327271 (-) 801 WP_076645190.1 ChbG/HpnK family deacetylase -
  OUY06_RS06740 - 1327280..1327771 (-) 492 WP_231953391.1 PTS glucose transporter subunit IIA -
  OUY06_RS06745 - 1327785..1329434 (-) 1650 WP_076645192.1 alpha,alpha-phosphotrehalase -
  OUY06_RS06750 - 1329448..1330926 (-) 1479 WP_052039223.1 PTS transporter subunit EIIC -
  OUY06_RS06755 treR 1331099..1331812 (+) 714 WP_016265311.1 trehalose operon repressor Regulator
  OUY06_RS06760 - 1331876..1332313 (-) 438 WP_076645194.1 hypothetical protein -
  OUY06_RS06765 - 1332418..1334964 (-) 2547 WP_076645196.1 YfhO family protein -
  OUY06_RS06770 - 1335131..1335997 (-) 867 WP_076645198.1 GRP family sugar transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=690304 OUY06_RS06755 WP_016265311.1 1331099..1331812(+) (treR) [Latilactobacillus sakei strain CNSC001WB]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=690304 OUY06_RS06755 WP_016265311.1 1331099..1331812(+) (treR) [Latilactobacillus sakei strain CNSC001WB]
ATGTCGAAAAAATATGAAATAATCTACCGTGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTA
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTCCC
ACAAGCGCCTTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGAGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367