Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   M8120_RS01520 Genome accession   NZ_CP097576
Coordinates   298305..301436 (-) Length   1043 a.a.
NCBI ID   WP_190357826.1    Uniprot ID   -
Organism   Microcystis aeruginosa str. Chao 1910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 293305..306436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8120_RS01490 (M8120_01475) - 294480..295442 (+) 963 WP_190357822.1 orange carotenoid-binding protein -
  M8120_RS01495 (M8120_01480) - 295610..295999 (+) 390 WP_002801387.1 hypothetical protein -
  M8120_RS01500 (M8120_01485) - 296167..296682 (+) 516 WP_190357823.1 alpha/beta hydrolase -
  M8120_RS01505 (M8120_01490) - 296901..297815 (+) 915 WP_190357824.1 DNA adenine methylase -
  M8120_RS01515 (M8120_01500) - 298032..298190 (-) 159 WP_190357825.1 hypothetical protein -
  M8120_RS01520 (M8120_01505) pilL-C 298305..301436 (-) 3132 WP_190357826.1 hybrid sensor histidine kinase/response regulator Machinery gene
  M8120_RS01525 (M8120_01510) - 301547..302209 (+) 663 WP_190357827.1 class I SAM-dependent methyltransferase -
  M8120_RS01535 (M8120_01520) - 302792..303733 (+) 942 WP_190357828.1 homogentisate phytyltransferase -
  M8120_RS01540 (M8120_01525) - 303730..305976 (+) 2247 WP_190357829.1 hypothetical protein -

Sequence

Protein


Download         Length: 1043 a.a.        Molecular weight: 115349.55 Da        Isoelectric Point: 4.6901

>NTDB_id=690288 M8120_RS01520 WP_190357826.1 298305..301436(-) (pilL-C) [Microcystis aeruginosa str. Chao 1910]
MMKPDSDHLFNEDLEQLLESLEDKDSDGEEALDELSFLFEPAARSGASLSQTPSSLPSERELRELFGGSINWEEAATNDL
YSTRRPAPKSEPEDGDDLESLLLENAAVRDSKAIITISNPNFYDSLEDLDAFLEKPTPGAQSPLPDIFESLEALLSESTA
VERETGAEHLQRLESLEIARESQENKFEDLEKLLTGSPRVVAGTPASSFSPPKRLNNGRPLVSKAFEQMMRVPIKQLDNL
SNLIGELVVKRNCLEQEQKDLGLFLDNLLNQVQKLSDEGSWLQDLYERTLLEKALLASRNPGGAIGYGRVKGENQGDSAM
TGELEDLDLDQFDDHFHKKVQKIIELIVRVRESASDLKFVVDETDQVMRSLRQVTTQLQEGMTKSRMAPFSQTADHLPRS
IRDMSLKLHKQAKLKVEGGDVLIDQMILEHLLSPMTHLVNNAITHGIESPQERMAKGKPALGTISVQAFLQGNQTVITVS
DDGAGIDANRVKRKAIKKGLISDREAQHLSRQEVYELLFRPGFSTKDQADDFSGRGVGLDVVRTSLIDVRGTATIDSVLG
KGSTFTIRLPLTLSICKALFCVSDRARIGFSRDEVEEVLLPKSLEVKVAKVEEVKMSFYQPRDIQMDMDGRRCVFWQNTL
LPFQPLSELLSYNRRGGRGSFYTSKQEDDSFSIVILRGGNNLLAVQVDQVIMSEDRFRSSLPEIVIKQIEGPIPKTLGIA
GATVLGDGTVMPIGDVLELIDIAQGRLRTDKGSPWRQTAPPVEVGPGQKSETMVLIVDDSITVRELLSSTFSKAGYRVEQ
ARDGQEAWEKLRGGLPCDIVFSDIEMPRMNGLELLSNLQKDPRLAAIPVAFLTSKAAYLHRKEAAKLGASGYFTKPCPDR
DLLSAAEKMIAGEVLLADSIKATPNQLSSSPLVLIVDDSVIMREMLTISFVKAGYRIEQARDGLEAWEKLRAGLACDLIL
CDIEMPRLNGLELLSCLQEDEQLQGIPVAMVTAQEAQKMQHLAAAKGAKGFFVVKPYIENVLLSAAQRLIAGEVLIQKES
LVD

Nucleotide


Download         Length: 3132 bp        

>NTDB_id=690288 M8120_RS01520 WP_190357826.1 298305..301436(-) (pilL-C) [Microcystis aeruginosa str. Chao 1910]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAAGATCTCGAACAGTTGTTAGAGAGTTTAGAAGACAAAGACAGCGA
CGGTGAGGAGGCTCTAGACGAACTCAGCTTTTTATTTGAGCCGGCAGCCAGGTCTGGGGCTTCTCTTAGCCAAACCCCGT
CTTCCTTGCCCTCAGAACGGGAATTACGGGAACTTTTTGGCGGTAGCATCAATTGGGAAGAAGCCGCCACTAATGATCTT
TATTCTACCCGTAGGCCTGCGCCAAAGTCAGAACCAGAAGATGGGGATGATCTGGAATCGCTGCTGTTAGAAAATGCAGC
GGTCCGGGACTCAAAAGCAATTATAACCATCAGCAACCCCAATTTTTACGACAGCCTCGAAGACTTAGACGCTTTTCTGG
AAAAACCCACCCCAGGAGCGCAATCGCCACTGCCAGACATCTTTGAATCCCTAGAGGCCCTCCTCTCGGAATCCACGGCA
GTGGAACGGGAGACTGGGGCGGAACATCTCCAACGGTTAGAATCACTGGAAATTGCCAGAGAAAGCCAAGAGAATAAATT
CGAGGATTTAGAAAAACTCCTCACAGGGAGCCCTCGGGTGGTGGCGGGGACTCCGGCCTCCAGTTTCAGTCCACCAAAAC
GGTTAAATAACGGGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGATGATGCGGGTGCCGATCAAACAATTGGATAACCTC
AGCAATCTGATCGGGGAACTGGTGGTTAAACGCAATTGCCTTGAACAGGAACAGAAAGACCTGGGTCTCTTTTTGGATAA
TTTGCTTAACCAAGTCCAAAAACTCAGCGATGAGGGCAGTTGGCTGCAGGATCTCTATGAAAGAACCCTCCTAGAAAAGG
CTTTGCTGGCTAGTCGCAATCCCGGCGGTGCCATCGGTTACGGTAGAGTTAAGGGAGAAAATCAGGGCGATTCGGCTATG
ACTGGCGAACTAGAGGACCTAGATCTCGACCAGTTTGATGATCATTTCCATAAAAAAGTGCAAAAAATCATCGAATTGAT
CGTGCGAGTGCGAGAATCGGCCTCTGATCTTAAATTTGTCGTCGATGAAACCGATCAGGTGATGCGTAGTCTGCGACAGG
TTACCACCCAACTACAGGAAGGGATGACCAAATCCCGCATGGCTCCCTTTAGTCAAACTGCCGATCACCTCCCCCGGTCA
ATTCGCGATATGTCCCTGAAACTGCATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCATCGATCAGATGAT
CCTTGAACATCTCCTTAGTCCCATGACCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCACCCCAAGAACGCA
TGGCCAAGGGGAAACCTGCCCTCGGTACGATCTCTGTCCAGGCATTCCTACAGGGAAATCAAACCGTGATCACCGTTAGT
GATGATGGGGCCGGTATTGATGCGAATCGGGTTAAACGCAAGGCGATCAAAAAAGGCCTAATCAGCGATCGGGAAGCTCA
ACACCTCAGTCGCCAAGAAGTCTATGAACTCCTCTTTCGCCCTGGTTTTAGTACCAAAGATCAGGCCGATGATTTTTCCG
GTCGTGGGGTGGGTTTAGATGTGGTGCGGACCAGTTTAATCGATGTGCGGGGAACGGCAACTATTGACTCGGTACTGGGC
AAAGGAAGCACTTTTACCATCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTTTTGTGTTAGTGATCGTGCGCG
CATCGGTTTCTCCAGGGACGAAGTGGAAGAAGTCCTCCTCCCGAAAAGCCTGGAGGTCAAGGTGGCAAAGGTGGAAGAGG
TGAAGATGAGCTTTTACCAGCCCAGGGATATCCAAATGGATATGGATGGACGGCGCTGCGTTTTCTGGCAAAATACTTTA
CTACCTTTCCAACCCCTGAGCGAGTTGCTTTCCTACAATCGGCGGGGCGGTCGCGGTAGTTTTTACACCAGCAAACAGGA
GGACGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAATCTCTTGGCAGTGCAGGTAGATCAAGTGATCATGTCAG
AGGACCGATTCCGAAGCTCGCTACCGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAACGCTTGGGATTGCC
GGGGCGACGGTTTTAGGCGATGGTACGGTGATGCCCATCGGCGATGTGTTAGAGTTAATCGACATTGCCCAGGGTCGTCT
GCGTACCGATAAGGGGAGTCCTTGGCGCCAAACTGCCCCCCCCGTAGAGGTGGGACCTGGGCAAAAATCGGAGACTATGG
TGCTGATTGTCGATGATTCGATTACTGTCCGGGAATTGCTCTCTTCAACCTTTAGTAAAGCCGGTTATCGTGTGGAACAG
GCCCGGGATGGTCAAGAAGCTTGGGAAAAATTACGCGGCGGTTTGCCCTGTGATATCGTTTTCTCCGATATCGAGATGCC
CCGCATGAATGGCCTGGAATTACTGTCTAATTTGCAAAAAGACCCCCGATTAGCGGCGATTCCCGTGGCTTTCTTGACTT
CCAAAGCGGCGTACCTTCATCGCAAGGAGGCGGCGAAATTAGGAGCTAGTGGTTATTTTACCAAGCCCTGCCCAGACAGA
GATTTACTCTCGGCAGCTGAAAAAATGATTGCGGGGGAAGTATTACTAGCTGATAGTATTAAAGCAACTCCTAATCAGCT
TTCATCCTCTCCTCTGGTCTTGATTGTCGATGATTCGGTAATCATGCGAGAAATGTTAACGATTTCTTTTGTTAAAGCTG
GTTATCGCATTGAACAGGCTCGGGACGGTTTAGAAGCATGGGAAAAATTACGGGCCGGATTAGCTTGTGATCTGATTCTC
TGCGATATCGAAATGCCGCGCCTGAATGGGTTAGAATTGCTCTCTTGTCTGCAAGAGGATGAACAACTTCAGGGGATACC
AGTAGCGATGGTTACCGCACAAGAGGCGCAAAAAATGCAGCATCTCGCCGCTGCTAAAGGGGCAAAAGGTTTTTTTGTTG
TCAAGCCCTATATTGAGAATGTTTTACTGTCGGCAGCCCAACGTTTGATCGCTGGTGAGGTATTAATCCAAAAAGAAAGT
CTTGTAGATTAA

Domains

Predicted by InterproScan.

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(228-384)

Response regulator receiver domain (Response_reg)

(913-1025)

Response regulator receiver domain (Response_reg)

(774-886)

CheW-like domain (CheW)

(608-741)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(435-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

57.456

91.946

0.528