Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OUY06_RS05300 Genome accession   NZ_CP113247
Coordinates   1043956..1044588 (-) Length   210 a.a.
NCBI ID   WP_011374620.1    Uniprot ID   Q38X61
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038956..1049588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS05285 - 1040272..1040895 (+) 624 WP_016265075.1 DnaD domain protein -
  OUY06_RS05290 nth 1040919..1041569 (+) 651 WP_016265076.1 endonuclease III -
  OUY06_RS05295 - 1041646..1043949 (-) 2304 WP_016265077.1 PBP1A family penicillin-binding protein -
  OUY06_RS05300 recU 1043956..1044588 (-) 633 WP_011374620.1 Holliday junction resolvase RecU Machinery gene
  OUY06_RS05305 - 1044664..1045224 (+) 561 WP_016265078.1 DUF1273 domain-containing protein -
  OUY06_RS05310 gpsB 1045304..1045684 (+) 381 WP_016265079.1 cell division regulator GpsB -
  OUY06_RS05320 - 1046174..1047325 (+) 1152 WP_025015790.1 class I SAM-dependent RNA methyltransferase -
  OUY06_RS05325 - 1047428..1048381 (+) 954 WP_278319709.1 phosphoglycerate dehydrogenase -
  OUY06_RS05330 - 1048437..1048826 (-) 390 WP_016265082.1 DUF1398 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24128.39 Da        Isoelectric Point: 9.4518

>NTDB_id=690287 OUY06_RS05300 WP_011374620.1 1043956..1044588(-) (recU) [Latilactobacillus sakei strain CNSC001WB]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPASLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV

Nucleotide


Download         Length: 633 bp        

>NTDB_id=690287 OUY06_RS05300 WP_011374620.1 1043956..1044588(-) (recU) [Latilactobacillus sakei strain CNSC001WB]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATACGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCCACCACCGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGTGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTGCAACGTTTATTTGTGTATCCGGCAAGCTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(35-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

94.762

0.467