Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M9A05_RS25290 Genome accession   NZ_CP097575
Coordinates   5485325..5485960 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5480325..5490960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS25275 (M9A05_25275) - 5481031..5482275 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  M9A05_RS25280 (M9A05_25280) - 5482363..5482896 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  M9A05_RS25285 (M9A05_25285) comA 5483027..5485252 (+) 2226 WP_031756491.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M9A05_RS25290 (M9A05_25290) exbB 5485325..5485960 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M9A05_RS25295 (M9A05_25295) - 5485957..5486397 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  M9A05_RS25300 (M9A05_25300) lpxK 5486397..5487395 (+) 999 WP_031756493.1 tetraacyldisaccharide 4'-kinase -
  M9A05_RS25305 (M9A05_25305) - 5487433..5487618 (+) 186 WP_003091157.1 Trm112 family protein -
  M9A05_RS25310 (M9A05_25310) kdsB 5487618..5488382 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M9A05_RS25315 (M9A05_25315) - 5488382..5488846 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  M9A05_RS25320 (M9A05_25320) murB 5488843..5489862 (+) 1020 WP_250177565.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=690285 M9A05_RS25290 WP_003091163.1 5485325..5485960(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=690285 M9A05_RS25290 WP_003091163.1 5485325..5485960(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF25]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81