Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M9A05_RS10090 Genome accession   NZ_CP097575
Coordinates   2198897..2199454 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193897..2204454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS10070 (M9A05_10070) pilR 2195173..2196510 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  M9A05_RS10075 (M9A05_10075) thiO 2196556..2197650 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  M9A05_RS10080 (M9A05_10080) - 2197785..2198294 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  M9A05_RS10085 (M9A05_10085) - 2198400..2198906 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  M9A05_RS10090 (M9A05_10090) pilV 2198897..2199454 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  M9A05_RS10095 (M9A05_10095) pilW 2199451..2200275 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  M9A05_RS10100 (M9A05_10100) pilX 2200272..2200859 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  M9A05_RS10105 (M9A05_10105) pilY1 2200871..2204362 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=690265 M9A05_RS10090 WP_003119423.1 2198897..2199454(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=690265 M9A05_RS10090 WP_003119423.1 2198897..2199454(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995