Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   OUY06_RS01455 Genome accession   NZ_CP113247
Coordinates   282145..284268 (+) Length   707 a.a.
NCBI ID   WP_016264495.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 277145..289268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS01445 - 278684..279169 (-) 486 WP_278319873.1 TetR/AcrR family transcriptional regulator -
  OUY06_RS01450 - 279276..281864 (+) 2589 WP_016264494.1 hydrophobe/amphiphile efflux-3 (HAE3) family transporter -
  OUY06_RS01455 clpE 282145..284268 (+) 2124 WP_016264495.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  OUY06_RS01460 - 284304..284840 (+) 537 WP_016264496.1 DUF308 domain-containing protein -
  OUY06_RS01465 - 284910..285527 (-) 618 WP_016264497.1 DUF1361 domain-containing protein -
  OUY06_RS01470 - 285724..286716 (+) 993 WP_099960162.1 choloylglycine hydrolase family protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 78445.88 Da        Isoelectric Point: 4.7412

>NTDB_id=690256 OUY06_RS01455 WP_016264495.1 282145..284268(+) (clpE) [Latilactobacillus sakei strain CNSC001WB]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=690256 OUY06_RS01455 WP_016264495.1 282145..284268(+) (clpE) [Latilactobacillus sakei strain CNSC001WB]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAACGGTGAACACGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGGAACTTAACACAGGAAGCACGGGATGGTTTATTAGATCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACTGCAGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCGCTAGAAGCCGGGACACAATATCGGGGCTCATTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGAATTGGTTCAACTGGTGGTGAAGATGGTGGCAAAGGGT
TAGCCGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTTAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCAGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCTGTAATGATTGCGACTGTTGATGATATTGCGCAATCGGTTGAAAGATTAACTGGGATTCCCGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAAAACTTGGGTCAACGGTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCACGCGCAATCCGCAGAAATCGGGCAGGTTTTTCTGAAGGCAACCAACCAATTGGGAGCTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATTGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCCAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACTAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTTATTCAAGCGGTCGATTCTGAAAACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)

AAA lid domain (AAA_lid_9)

(262-359)

AAA domain (Cdc48 subfamily) (AAA_2)

(446-605)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(613-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

49.214

89.958

0.443
  clpC Lactococcus lactis subsp. cremoris KW2

48.889

89.109

0.436
  clpE Streptococcus pneumoniae Rx1

47.504

87.836

0.417
  clpE Streptococcus pneumoniae D39

47.504

87.836

0.417
  clpE Streptococcus pneumoniae R6

47.504

87.836

0.417
  clpE Streptococcus pneumoniae TIGR4

47.343

87.836

0.416
  clpC Streptococcus pneumoniae Rx1

43.862

94.484

0.414
  clpC Streptococcus pneumoniae D39

43.862

94.484

0.414
  clpC Streptococcus pneumoniae TIGR4

44.154

91.938

0.406
  clpC Bacillus subtilis subsp. subtilis str. 168

45.032

88.26

0.397
  clpC Streptococcus thermophilus LMD-9

44.75

87.553

0.392
  clpC Streptococcus thermophilus LMG 18311

44.013

87.412

0.385
  clpC Streptococcus mutans UA159

43.851

87.412

0.383
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.64

87.977

0.366