Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OUY23_RS26840 Genome accession   NZ_CP113246
Coordinates   5808926..5809291 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain SMC4386     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5803926..5814291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY23_RS26825 (OUY23_26825) pilK 5805270..5806145 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  OUY23_RS26830 (OUY23_26830) pilJ 5806206..5808254 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  OUY23_RS26835 (OUY23_26835) - 5808339..5808875 (-) 537 WP_033956703.1 chemotaxis protein CheW -
  OUY23_RS26840 (OUY23_26840) pilH 5808926..5809291 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  OUY23_RS26845 (OUY23_26845) pilG 5809338..5809745 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  OUY23_RS26850 (OUY23_26850) gshB 5810000..5810953 (+) 954 WP_003100943.1 glutathione synthase -
  OUY23_RS26855 (OUY23_26855) - 5811100..5811993 (+) 894 WP_003162015.1 energy transducer TonB -
  OUY23_RS26860 (OUY23_26860) - 5812042..5812611 (+) 570 WP_033956709.1 YqgE/AlgH family protein -
  OUY23_RS26865 (OUY23_26865) ruvX 5812611..5813045 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  OUY23_RS26870 (OUY23_26870) pyrR 5813157..5813669 (+) 513 WP_033956711.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=690236 OUY23_RS26840 WP_003084587.1 5808926..5809291(-) (pilH) [Pseudomonas aeruginosa strain SMC4386]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=690236 OUY23_RS26840 WP_003084587.1 5808926..5809291(-) (pilH) [Pseudomonas aeruginosa strain SMC4386]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364