Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C822_RS05800 Genome accession   NZ_CP097561
Coordinates   1117626..1118996 (-) Length   456 a.a.
NCBI ID   WP_004051773.1    Uniprot ID   A0A2Z4VZF8
Organism   Ligilactobacillus murinus ASF361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112626..1123996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C822_RS05785 (C822_001160) cysS 1112901..1114310 (-) 1410 WP_004051768.1 cysteine--tRNA ligase -
  C822_RS05790 (C822_001161) gltX 1114919..1116409 (-) 1491 WP_004051770.1 glutamate--tRNA ligase -
  C822_RS05795 (C822_001162) - 1116498..1117607 (-) 1110 WP_004051772.1 PIN/TRAM domain-containing protein -
  C822_RS05800 (C822_001163) radA 1117626..1118996 (-) 1371 WP_004051773.1 DNA repair protein RadA Machinery gene
  C822_RS05805 (C822_001164) - 1119073..1119609 (-) 537 WP_004051774.1 dUTP pyrophosphatase -
  C822_RS05810 (C822_001165) - 1119746..1120033 (+) 288 WP_039936561.1 GNAT family N-acetyltransferase -
  C822_RS05815 (C822_001166) rpiA 1120058..1120744 (+) 687 WP_004051776.1 ribose-5-phosphate isomerase RpiA -
  C822_RS05820 (C822_001167) - 1120881..1122215 (+) 1335 WP_004051777.1 C1 family peptidase -
  C822_RS05825 (C822_001168) - 1122263..1122934 (-) 672 WP_004051778.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49264.65 Da        Isoelectric Point: 6.9502

>NTDB_id=690150 C822_RS05800 WP_004051773.1 1117626..1118996(-) (radA) [Ligilactobacillus murinus ASF361]
MAKVKTRYVCQNCGYVSPRYLGRCPNCSEWNTLVEEVEQKSAAVKATPRVTLTGTTNAPQKIDTIKISQTPRVDTKNGEL
NRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGSLSDQGGKLLYVSGEESANQIKMRAQRLGVSGSEFYLYPETDMGSIL
QNIEDLKPDYVIIDSVQTMQMPEVTSAVGSVAQIREVTAALMQVAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYF
EGDMHRTYRILRAVKNRFGSTNEIGVFEMRDGGLVEVPNPSEIFLEERLSGATGSAVVVSMEGTRPILAEIQALVTPTAF
GNAKRTTTGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSLVSSYRDQQTAPDDCFIGELGLT
GEIRRVTRIDQRIAEAAKLGFKRVFIPQNNLNGLELPTNIDVVGVKTISEALRHVF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=690150 C822_RS05800 WP_004051773.1 1117626..1118996(-) (radA) [Ligilactobacillus murinus ASF361]
ATGGCAAAAGTCAAAACTAGATATGTATGTCAAAATTGTGGCTATGTATCACCACGTTATTTGGGGCGGTGTCCTAACTG
TAGCGAATGGAACACTTTAGTTGAAGAAGTTGAACAAAAAAGTGCAGCGGTTAAAGCTACCCCACGCGTTACTTTGACAG
GAACAACGAATGCCCCACAAAAGATCGATACGATCAAGATCTCACAAACACCTAGAGTCGATACGAAAAATGGTGAATTG
AATCGGGTCTTAGGTGGGGGCGTTGTTCCTGGTTCAATGGTCTTGATCGGGGGCGATCCTGGGATCGGTAAATCAACGTT
ACTTTTACAAGTTTCGGGAAGTTTATCAGATCAAGGGGGAAAGTTGCTTTACGTTTCGGGTGAAGAAAGTGCAAACCAGA
TCAAGATGCGGGCCCAACGCTTGGGAGTCTCAGGCAGTGAATTTTACCTTTACCCTGAGACCGATATGGGCAGTATTTTA
CAAAATATCGAAGACTTAAAACCAGACTATGTCATCATTGACTCAGTTCAAACGATGCAGATGCCAGAAGTTACTTCGGC
GGTCGGAAGTGTGGCGCAGATCCGCGAGGTGACTGCTGCTTTGATGCAAGTTGCTAAGACCAATGGGATCACGATCTTTA
TCGTTGGTCATGTGACCAAAGGTGGCGCGATCGCTGGGCCCAAGATCTTAGAGCATATGGTCGATACGGTGTTGTACTTT
GAAGGTGACATGCATCGCACCTACCGGATCTTACGTGCAGTCAAAAATCGTTTTGGTTCGACCAATGAGATCGGCGTGTT
TGAGATGCGAGATGGCGGGCTAGTTGAAGTTCCTAATCCATCTGAGATCTTCTTAGAAGAGCGTTTAAGTGGTGCGACCG
GTTCGGCTGTCGTGGTCTCAATGGAAGGAACACGGCCGATCTTAGCAGAGATCCAAGCGTTAGTCACCCCAACAGCCTTT
GGCAACGCTAAGCGAACAACAACGGGACTAGATCACAATCGGGTCTCGTTGATCATGGCAGTGCTTGAAAAGCGGGCGGG
GCTACTTTTACAAAATCAAGATGCTTACTTAAAAGCTGCTGGGGGCGTTAAATTAGACGAACCAGCGATCGATCTAGCGA
TCGCGATGAGTTTGGTATCGAGTTATCGTGACCAACAAACCGCACCAGATGACTGTTTTATCGGTGAATTAGGTTTGACC
GGTGAGATCAGACGGGTGACTCGGATCGACCAAAGAATAGCTGAAGCAGCTAAATTAGGCTTTAAACGGGTCTTTATCCC
CCAAAATAATTTAAATGGTCTGGAATTGCCAACTAATATCGATGTAGTTGGCGTTAAGACGATCAGTGAAGCTTTACGGC
ATGTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4VZF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.421

100

0.684
  radA Streptococcus pneumoniae D39

68.421

100

0.684
  radA Streptococcus pneumoniae R6

68.421

100

0.684
  radA Streptococcus pneumoniae TIGR4

68.421

100

0.684
  radA Streptococcus mitis NCTC 12261

68.202

100

0.682
  radA Streptococcus mitis SK321

68.202

100

0.682
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.342

0.627