Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PAC13_RS28310 Genome accession   NZ_CP097557
Coordinates   5874825..5875382 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C1.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5869825..5880382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS28290 (PAC13_28235) pilR 5871101..5872438 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PAC13_RS28295 (PAC13_28240) thiO 5872484..5873578 (-) 1095 WP_023092933.1 glycine oxidase ThiO -
  PAC13_RS28300 (PAC13_28245) - 5873713..5874222 (+) 510 WP_023092934.1 GspH/FimT family pseudopilin -
  PAC13_RS28305 (PAC13_28250) - 5874328..5874834 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PAC13_RS28310 (PAC13_28255) pilV 5874825..5875382 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PAC13_RS28315 (PAC13_28260) pilW 5875379..5876203 (+) 825 WP_023092935.1 type 4a pilus minor pilin PilW -
  PAC13_RS28320 (PAC13_28265) pilX 5876200..5876787 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PAC13_RS28325 (PAC13_28270) pilY1 5876799..5880284 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=690095 PAC13_RS28310 WP_003110422.1 5874825..5875382(+) (pilV) [Pseudomonas aeruginosa strain C1.3]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=690095 PAC13_RS28310 WP_003110422.1 5874825..5875382(+) (pilV) [Pseudomonas aeruginosa strain C1.3]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984