Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   OSZ60_RS11395 Genome accession   NZ_CP113230
Coordinates   2361133..2361657 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain BIAI 160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2356133..2366657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ60_RS11375 (OSZ60_11375) - 2356200..2358671 (-) 2472 WP_023090127.1 penicillin-binding protein 1A -
  OSZ60_RS11380 (OSZ60_11380) pilM 2358856..2359920 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OSZ60_RS11385 (OSZ60_11385) pilN 2359920..2360516 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OSZ60_RS11390 (OSZ60_11390) pilO 2360513..2361136 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSZ60_RS11395 (OSZ60_11395) comL/pilP 2361133..2361657 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OSZ60_RS11400 (OSZ60_11400) pilQ 2361711..2363855 (+) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  OSZ60_RS11405 (OSZ60_11405) aroK 2363867..2364385 (+) 519 WP_003095833.1 shikimate kinase AroK -
  OSZ60_RS11410 (OSZ60_11410) aroB 2364435..2365541 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=689899 OSZ60_RS11395 WP_003095836.1 2361133..2361657(+) (comL/pilP) [Pseudomonas aeruginosa strain BIAI 160]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=689899 OSZ60_RS11395 WP_003095836.1 2361133..2361657(+) (comL/pilP) [Pseudomonas aeruginosa strain BIAI 160]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362