Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OSZ60_RS11385 Genome accession   NZ_CP113230
Coordinates   2359920..2360516 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain BIAI 160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354920..2365516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ60_RS11375 (OSZ60_11375) - 2356200..2358671 (-) 2472 WP_023090127.1 penicillin-binding protein 1A -
  OSZ60_RS11380 (OSZ60_11380) pilM 2358856..2359920 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OSZ60_RS11385 (OSZ60_11385) pilN 2359920..2360516 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OSZ60_RS11390 (OSZ60_11390) pilO 2360513..2361136 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSZ60_RS11395 (OSZ60_11395) comL/pilP 2361133..2361657 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OSZ60_RS11400 (OSZ60_11400) pilQ 2361711..2363855 (+) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  OSZ60_RS11405 (OSZ60_11405) aroK 2363867..2364385 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=689897 OSZ60_RS11385 WP_003095839.1 2359920..2360516(+) (pilN) [Pseudomonas aeruginosa strain BIAI 160]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=689897 OSZ60_RS11385 WP_003095839.1 2359920..2360516(+) (pilN) [Pseudomonas aeruginosa strain BIAI 160]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTACTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369