Detailed information NTG0689858

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OSZ60_RS00740
• Genome accession: NZ_CP113230
• Coordinates: 148113..149117 (-)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain BIAI 160
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 143113..154117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSZ60_RS00725 (OSZ60_00725)	-	143596..144603 (+)	1008	WP_003098486.1	TolB family protein	-
OSZ60_RS00730 (OSZ60_00730)	mutS	144729..147296 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
OSZ60_RS00735 (OSZ60_00735)	fdxA	147363..147686 (+)	324	WP_003092272.1	ferredoxin FdxA	-
OSZ60_RS00740 (OSZ60_00740)	rpoS	148113..149117 (-)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
OSZ60_RS00745 (OSZ60_00745)	-	149222..150115 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
OSZ60_RS00750 (OSZ60_00750)	-	150161..150796 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OSZ60_RS00755 (OSZ60_00755)	surE	150829..151578 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OSZ60_RS00760 (OSZ60_00760)	truD	151566..152633 (-)	1068	WP_033937525.1	tRNA pseudouridine(13) synthase TruD	-
OSZ60_RS00765 (OSZ60_00765)	ispF	152630..153103 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OSZ60_RS00770 (OSZ60_00770)	fghA	153174..154025 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=689858 OSZ60_RS00740 WP_003143264.1 148113..149117(-) (rpoS) [Pseudomonas aeruginosa strain BIAI 160]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=689858 OSZ60_RS00740 WP_003143264.1 148113..149117(-) (rpoS) [Pseudomonas aeruginosa strain BIAI 160]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611